KCC001916A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001916A_C01 KCC001916A_c01
cgtgactatatatcCAGAAATGGCAGCTCTTCTTGCTCGCTCCTCGGCCTCCACGGCCTT
CGCTGGGCGTCGCGCCAGTGGAGTTGCATGCCCTCGCGCGCCCGTGTCGCCTGTTTGCAT
CAGGCGCAGCGTGGTGTCAGTGCGCGCGTCGGCTGAGCCTTCTGCTCCCGCTAAGCCGGC
TGGCAGCCAGGAGTATGTGGAGGACAGCGAGTTCGCCGTCTCGAAGATCTCTTTCGGGTC
CATCCTGACTCCCGTGGGTCTGGGCCTGCTGTTCTGGGGCTTCGGTGCCTACTTCCTGCT
CCTCCCCGGCGCCGACCTATCCTCGCTGTTCCTGATCTATGGTTTCCCTATCAGCCTGCT
GGGCTTTGCGCTGAGCTATGCTCAGCTGAAGCCGGTGCCCTGCAAGACGACCAAGGCGGC
GTTCGCGCTTCGTGAGAGCCAGATGACGGACATCCAGAAGCAGATCCGCGAGGACGTGAC
CCGCTTCCGGTATGGTGACGAGCAGCACCTGGAGGAGGCTCTGGACCGCATCTTCAAGCC
CACCCGTCCCGGCGGTGTGGCGCGCAAGTTCTTGCCCACCCTCATAGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001916A_C01 KCC001916A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_198682.3| expressed protein [Arabidopsis thaliana]             156  2e-37
gb|AAN71998.1| Unknown protein [Arabidopsis thaliana]                 155  5e-37
dbj|BAC42585.1| unknown protein [Arabidopsis thaliana]                154  9e-37
dbj|BAB10156.1| gene_id:MBB18.21~pir||S75762~similar to unknown ...   118  7e-26
ref|NP_442427.1| unknown protein [Synechocystis sp. PCC 6803] gi...    78  8e-14

>ref|NP_198682.3| expressed protein [Arabidopsis thaliana]
          Length = 286

 Score =  156 bits (395), Expect = 2e-37
 Identities = 79/164 (48%), Positives = 107/164 (65%)
 Frame = +2

Query: 92  PRAPVSPVCIRRSVVSVRASAEPSAPAKPAGSQEYVEDSEFAVSKISFGSILTPVGLGLL 271
           P   +    ++  VV   A +  S+P+  +G +  + D EF ++KISFG I   +G+ LL
Sbjct: 49  PETRLKREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLL 108

Query: 272 FWGFGAYFLLLPGADLSSLFLIYGFPISLLGFALSYAQLKPVPCKTTKAAFALRESQMTD 451
            +GFGAYF +LPG + S++ L YGFP+S++G AL YA+LKPVPC +   A  LRES  T 
Sbjct: 109 SYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATP 168

Query: 452 IQKQIREDVTRFRYGDEQHLEEALDRIFKPTRPGGVARKFLPTL 583
           I  Q+R DVTR+RYGDEQHLEEAL RIF+    GG+ R+  P L
Sbjct: 169 ILTQVRNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPIL 212

>gb|AAN71998.1| Unknown protein [Arabidopsis thaliana]
          Length = 286

 Score =  155 bits (391), Expect = 5e-37
 Identities = 78/164 (47%), Positives = 106/164 (64%)
 Frame = +2

Query: 92  PRAPVSPVCIRRSVVSVRASAEPSAPAKPAGSQEYVEDSEFAVSKISFGSILTPVGLGLL 271
           P   +    ++  VV     +  S+P+  +G +  + D EF ++KISFG I   +G+ LL
Sbjct: 49  PETRLKREVLKLDVVGRAVDSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLL 108

Query: 272 FWGFGAYFLLLPGADLSSLFLIYGFPISLLGFALSYAQLKPVPCKTTKAAFALRESQMTD 451
            +GFGAYF +LPG + S++ L YGFP+S++G AL YA+LKPVPC +   A  LRES  T 
Sbjct: 109 SYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATP 168

Query: 452 IQKQIREDVTRFRYGDEQHLEEALDRIFKPTRPGGVARKFLPTL 583
           I  Q+R DVTR+RYGDEQHLEEAL RIF+    GG+ R+  P L
Sbjct: 169 ILTQVRNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPIL 212

>dbj|BAC42585.1| unknown protein [Arabidopsis thaliana]
          Length = 286

 Score =  154 bits (389), Expect = 9e-37
 Identities = 78/164 (47%), Positives = 106/164 (64%)
 Frame = +2

Query: 92  PRAPVSPVCIRRSVVSVRASAEPSAPAKPAGSQEYVEDSEFAVSKISFGSILTPVGLGLL 271
           P   +    ++  VV   A +  S+P+  +G +  + D EF ++KISFG I   +G+ LL
Sbjct: 49  PETRLKREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLL 108

Query: 272 FWGFGAYFLLLPGADLSSLFLIYGFPISLLGFALSYAQLKPVPCKTTKAAFALRESQMTD 451
            +GFGAYF +LPG + S++ L YGFP+S++G AL YA+LKPVPC +   A  LRES  T 
Sbjct: 109 SYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATP 168

Query: 452 IQKQIREDVTRFRYGDEQHLEEALDRIFKPTRPGGVARKFLPTL 583
           I  Q+R DVTR+RYGD QHLEEAL RIF+    GG+ R+  P L
Sbjct: 169 ILTQVRNDVTRYRYGDAQHLEEALKRIFQYGLGGGIPRRSAPIL 212

>dbj|BAB10156.1| gene_id:MBB18.21~pir||S75762~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 204

 Score =  118 bits (295), Expect = 7e-26
 Identities = 55/88 (62%), Positives = 68/88 (76%)
 Frame = +2

Query: 275 WGFGAYFLLLPGADLSSLFLIYGFPISLLGFALSYAQLKPVPCKTTKAAFALRESQMTDI 454
           +GFGAYF +LPG + S++ L YGFP+S++G AL YA+LKPVPC +   A  LRES  T I
Sbjct: 46  YGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPI 105

Query: 455 QKQIREDVTRFRYGDEQHLEEALDRIFK 538
             Q+R DVTR+RYGDEQHLEEAL RIF+
Sbjct: 106 LTQVRNDVTRYRYGDEQHLEEALKRIFQ 133

>ref|NP_442427.1| unknown protein [Synechocystis sp. PCC 6803] gi|7452243|pir||S75762
           hypothetical protein slr0575 - Synechocystis sp. (strain
           PCC 6803) gi|1001253|dbj|BAA10497.1|
           ORF_ID:slr0575~unknown protein [Synechocystis sp. PCC
           6803]
          Length = 184

 Score = 78.2 bits (191), Expect = 8e-14
 Identities = 47/105 (44%), Positives = 62/105 (58%), Gaps = 2/105 (1%)
 Frame = +2

Query: 224 KISFGSILTPVGLGLLFWGFGAYFLLLPGADLSSLFLIYGFPISLLGFALSYAQLKPVPC 403
           KIS  ++   VG  L   GF AY L     +L+  F  YG P+ L G AL  A+LKP+P 
Sbjct: 4   KISLAAVGLTVGGILTITGFVAYALDYATLNLAGFF--YGIPLVLGGLALKAAELKPIPF 61

Query: 404 K--TTKAAFALRESQMTDIQKQIREDVTRFRYGDEQHLEEALDRI 532
              T++   ALR    T  Q QIR+DVTR+RYG E HL+E+L+R+
Sbjct: 62  SQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLERL 106



EST assemble image


clone accession position
1 MX043d05_r BP087776 1 406
2 HC047c01_r AV635506 15 507
3 HC025b12_r AV633784 15 461
4 LC069f02_r AV623855 23 491
5 MXL018b09_r BP094100 129 590




Chlamydomonas reinhardtii
Kazusa DNA Research Institute