Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001910A_C01 KCC001910A_c01
(423 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM98908.1| immediate-early protein IE180 [Pseudorabies virus] 40 0.006
dbj|BAB23818.1| unnamed protein product [Mus musculus] 35 0.19
ref|ZP_00138453.1| COG1132: ABC-type multidrug transport system,... 35 0.24
gb|AAK53449.1| unknown [Streptomyces aureofaciens] 35 0.32
ref|NP_738488.1| putative translation initiation factor IF-2 [Co... 34 0.41
>gb|AAM98908.1| immediate-early protein IE180 [Pseudorabies virus]
Length = 1454
Score = 40.4 bits (93), Expect = 0.006
Identities = 43/133 (32%), Positives = 51/133 (38%), Gaps = 4/133 (3%)
Frame = +1
Query: 37 PRPPLSPCLTSLSRWGIRPTQLINRGHPHSRAHSACR*RFHG*PTALKPSQAGHPG*GNR 216
PR P S S G L+ P SRA S R P AL ++AG PG R
Sbjct: 118 PRVPGRRVPRSGSHQGSEHGHLVLGPRPRSRAGSGPRPPT---PAALAAAEAGAPGGPGR 174
Query: 217 SSVAARKTLPPDPG*VAPYSGLRPWQPMVGP---KTQPCCRSPTKRLRIHRTSSAAYPQQ 387
SS +A G P + R W P G + P R T + AA P +
Sbjct: 175 SSPSAASPASSSSGSPGPSAAPRRWSPARGDPVGEPGPAARPRTPAPPAQPAAVAAAPAR 234
Query: 388 R-PASSACATAQP 423
R PAS A A P
Sbjct: 235 RGPASPASPAAGP 247
>dbj|BAB23818.1| unnamed protein product [Mus musculus]
Length = 367
Score = 35.4 bits (80), Expect = 0.19
Identities = 24/77 (31%), Positives = 37/77 (47%)
Frame = +2
Query: 185 RKQGTQDRETEAALRHEKLCPLIPVELHPIQACGLGNLWLVPRRSLVAALPQNASASIAH 364
RK+G DRE A RH +CP H A GL + + RR ++A P++ S + A+
Sbjct: 4 RKRGPHDRELRAQGRHSTVCPTGGPPAH--GAAGLHSSGVGLRR-ILAHFPEDLSLAFAY 60
Query: 365 HQQLIRSSAPHPPRAQP 415
+ R + P + P
Sbjct: 61 GSAVYRQAGPSAHQENP 77
>ref|ZP_00138453.1| COG1132: ABC-type multidrug transport system, ATPase and permease
components [Pseudomonas aeruginosa UCBPP-PA14]
Length = 682
Score = 35.0 bits (79), Expect = 0.24
Identities = 22/70 (31%), Positives = 33/70 (46%)
Frame = +1
Query: 196 HPG*GNRSSVAARKTLPPDPG*VAPYSGLRPWQPMVGPKTQPCCRSPTKRLRIHRTSSAA 375
H R S AAR+ PP P ++P S + + P ++PC S T R T+++
Sbjct: 18 HASSSPRPSTAARRVTPPPP--ISPGSRI-----LASPGSRPCWPSATANWRCSPTATSR 70
Query: 376 YPQQRPASSA 405
P P S+A
Sbjct: 71 LPNFHPCSAA 80
>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
Length = 579
Score = 34.7 bits (78), Expect = 0.32
Identities = 39/147 (26%), Positives = 49/147 (32%), Gaps = 15/147 (10%)
Frame = +1
Query: 28 PPVPRPPLSPCLTSLSRWGIRPTQLINR---------GHPHSRAHSACR*RFHG*PTALK 180
PP PRP + ++ +R G RP R P + A R PT
Sbjct: 410 PPGPRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPV 469
Query: 181 PSQAGHPG*GN------RSSVAARKTLPPDPG*VAPYSGLRPWQPMVGPKTQPCCRSPTK 342
P P GN R A + PG P RP P P P R+P+
Sbjct: 470 PRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRPPPPRAPPPHHPSARNPSA 529
Query: 343 RLRIHRTSSAAYPQQRPASSACATAQP 423
R A P+ RP A A+P
Sbjct: 530 R---------ATPRPRPPPRPSAAARP 547
>ref|NP_738488.1| putative translation initiation factor IF-2 [Corynebacterium
efficiens YS-314] gi|23493719|dbj|BAC18688.1| putative
translation initiation factor IF-2 [Corynebacterium
efficiens YS-314]
Length = 964
Score = 34.3 bits (77), Expect = 0.41
Identities = 26/78 (33%), Positives = 33/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 166 PTALKPSQAGHPG*--GNRSSVAARKTLPPDPG*VAPYSGLRPWQPMVGPKTQPCCRSPT 339
PTA KP+ G G+ + AA P PG AP P +PM P +P R+P
Sbjct: 127 PTAPKPATPAFSGPTPGDAAKKAAEDKATPKPGGEAPRPNAMP-RPMAKPGPKPGARAPR 185
Query: 340 KRLRIHRTSSAAYPQQRP 393
T +A P RP
Sbjct: 186 VANNPFSTGAADRPGPRP 203
