KCC001909A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001909A_C01 KCC001909A_c01
tcGATCTGCATTTTGTCCTACTGAGAGGATTCCATCCGCAGCTGCCTGTCGAGTCCGACC
CGAGTTTACGCTGCTTACGTGTGGCTGAGCCGATACCAAGCAACCCCAAAACAACCAGCT
AGCTCCAACATAACTAATGGCAACAGCGTTGGATGTAGATGCGGGGCGAGTCCAGGTGGT
GTCAACCTCGGAGAGTAGCTCGTTTCTTGGGCGAGTCTTCGCAGGCCGGCGAGAGTCGTC
CATTCTTAGAAATGAGCGCGAGTACAGCAGCGCGCTGAGCGAGGCGGCCACAGAGGACTT
TTCCGACCTGGACCAGCTCGGATTCCTGAGCGTGCCTGGCGGCCGCGACAAGGAGGGGCG
GCAGGTGGTGATGGTGGCGGCCAAAAACTACCCCGCGCGCGTGCTCAAAACTGACCGCGT
GTTCAGGTACTTTGCCCACACGCTGGACGCCTTGGTGGACGAGCCGTACGTAGTGGTGTG
GCTGCACACCGGCAGCAGCTACTGGAACAACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001909A_C01 KCC001909A_c01
         (512 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC17644.1| dJ776P7.1 (Novel protein) [Homo sapiens]               59  5e-08
gb|AAH13132.1| GDAP2 protein [Homo sapiens]                            59  5e-08
ref|NP_060156.1| ganglioside induced differentiation associated ...    59  5e-08
ref|XP_342304.1| similar to ganglioside-induced differentiation-...    59  5e-08
ref|NP_034399.1| ganglioside-induced differentiation-associated-...    58  6e-08

>emb|CAC17644.1| dJ776P7.1 (Novel protein) [Homo sapiens]
          Length = 482

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%)
 Frame = +2

Query: 248 RNEREYSSALSEAATEDFSDLDQLGFLSVPGGRDKEGRQVVMVAAKNYPARVLKTDRVFR 427
           +++R Y+  L +A +ED SD+  L  L    G D  GR V++V  +N P  ++  D+   
Sbjct: 314 QHQRNYNRWLCQARSEDLSDIASLKAL-YQTGVDNCGRTVMVVVGRNIPVTLIDMDKALL 372

Query: 428 YFAHTLDALVDEPYVVVWLHTGSSYWNN 511
           YF H +D +  + YV+V+ HT +S +N+
Sbjct: 373 YFIHVMDHIAVKEYVLVYFHTLTSEYNH 400

>gb|AAH13132.1| GDAP2 protein [Homo sapiens]
          Length = 496

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%)
 Frame = +2

Query: 248 RNEREYSSALSEAATEDFSDLDQLGFLSVPGGRDKEGRQVVMVAAKNYPARVLKTDRVFR 427
           +++R Y+  L +A +ED SD+  L  L    G D  GR V++V  +N P  ++  D+   
Sbjct: 314 QHQRNYNRWLCQARSEDLSDIASLKAL-YQTGVDNCGRTVMVVVGRNIPVTLIDMDKALL 372

Query: 428 YFAHTLDALVDEPYVVVWLHTGSSYWNN 511
           YF H +D +  + YV+V+ HT +S +N+
Sbjct: 373 YFIHVMDHIAVKEYVLVYFHTLTSEYNH 400

>ref|NP_060156.1| ganglioside induced differentiation associated protein 2 [Homo
           sapiens] gi|7020049|dbj|BAA90976.1| unnamed protein
           product [Homo sapiens]
          Length = 497

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%)
 Frame = +2

Query: 248 RNEREYSSALSEAATEDFSDLDQLGFLSVPGGRDKEGRQVVMVAAKNYPARVLKTDRVFR 427
           +++R Y+  L +A +ED SD+  L  L    G D  GR V++V  +N P  ++  D+   
Sbjct: 314 QHQRNYNRWLCQARSEDLSDIASLKAL-YQTGVDNCGRTVMVVVGRNIPVTLIDMDKALL 372

Query: 428 YFAHTLDALVDEPYVVVWLHTGSSYWNN 511
           YF H +D +  + YV+V+ HT +S +N+
Sbjct: 373 YFIHVMDHIAVKEYVLVYFHTLTSEYNH 400

>ref|XP_342304.1| similar to ganglioside-induced differentiation-associated-protein
           2; DNA segment, Chr 3, ERATO Doi 801, expressed;
           expressed sequence C77050 [Rattus norvegicus]
          Length = 656

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%)
 Frame = +2

Query: 248 RNEREYSSALSEAATEDFSDLDQLGFLSVPGGRDKEGRQVVMVAAKNYPARVLKTDRVFR 427
           +++R Y+  L +A +ED SD+  L  L    G D  GR V++V  +N P  ++  D+   
Sbjct: 330 QHQRNYNRWLCQARSEDLSDIASLKAL-YQTGVDNCGRTVMVVVGRNIPVTLIDMDKALL 388

Query: 428 YFAHTLDALVDEPYVVVWLHTGSSYWNN 511
           YF H +D +  + YV+V+ HT +S +N+
Sbjct: 389 YFIHVMDHIAVKEYVLVYFHTLTSEYNH 416

>ref|NP_034399.1| ganglioside-induced differentiation-associated-protein 2 [Mus
           musculus] gi|12836412|dbj|BAB23645.1| unnamed protein
           product [Mus musculus] gi|19264076|gb|AAH25070.1|
           Ganglioside-induced differentiation-associated-protein 2
           [Mus musculus]
          Length = 498

 Score = 58.2 bits (139), Expect = 6e-08
 Identities = 30/88 (34%), Positives = 51/88 (57%)
 Frame = +2

Query: 248 RNEREYSSALSEAATEDFSDLDQLGFLSVPGGRDKEGRQVVMVAAKNYPARVLKTDRVFR 427
           +++R Y+  L +A +ED SD+  L  L    G D  GR V++V  +N P  ++  D+   
Sbjct: 315 QHQRNYNRWLCQARSEDLSDIASLKAL-YQTGVDNCGRTVMVVVGRNIPVTLIDMDKALL 373

Query: 428 YFAHTLDALVDEPYVVVWLHTGSSYWNN 511
           YF H +D +  + YV+V+ HT +S +N+
Sbjct: 374 YFIHVMDHIAVKEYVLVYFHTLTSDYNH 401



EST assemble image


clone accession position
1 HCL060d04_r AV642914 1 495
2 LCL062b09_r AV629621 3 512
3 HC023c06_r AV633635 15 468




Chlamydomonas reinhardtii
Kazusa DNA Research Institute