KCC001905A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001905A_C01 KCC001905A_c01
TTCACGCACATTTCCCGCTTTATTGTGGAGGGCAGCTCGGGCCCTCGGACTTGTTTTACA
ACAGCGCAGTCTTGGGCCCCGACGCAGACCGACTCCCGAGTGCGGTTCAAGAAAGCAAAT
GAGTTCGTAGCTGCGAGCCAGGTCGGTCGCCAGGCCGCTGAATGCCTCTTGAACGGCGAA
GACCGGCTCGCAAAATGGGGCTTTACGGAGCGCTGATGGTCGCTCTGATGGCCTCGCTCA
GCAGCATTGTCCTCGGCGAGCGTCGACTCTTCATCAGGGATTTGCCGGAGCCCAAAACGC
GCTGTCGGAACACTGTTCAGGGCCTGAACATGGTAACCGACGACCGCGGCGTGGTCTGCA
AGCGCAGCGATCTTAGCTACTCCACGGGCTGCTGCACCAGTGGTAACCAGCACGACTGCG
CCTTGTGTGATATGCGGGACCGGTGCTGCTCGGAGTACGAGGCGTGCGTGTCGTGCTGCC
TGGCGCCACAGCACAACGCCTTCAACATAGCAAAGCAGGCGCTGAGGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001905A_C01 KCC001905A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_316825.1| ENSANGP00000010276 [Anopheles gambiae] gi|21299...    70  2e-11
ref|NP_788909.1| CG15643-PA [Drosophila melanogaster] gi|7293087...    69  3e-11
ref|XP_132289.1| RIKEN cDNA 2410131K14 [Mus musculus] gi|2635565...    68  6e-11
ref|NP_079014.1| hypothetical protein FLJ21415 [Homo sapiens] gi...    68  6e-11
ref|NP_191498.2| expressed protein [Arabidopsis thaliana]              67  2e-10

>ref|XP_316825.1| ENSANGP00000010276 [Anopheles gambiae] gi|21299967|gb|EAA12112.1|
           ENSANGP00000010276 [Anopheles gambiae str. PEST]
          Length = 259

 Score = 69.7 bits (169), Expect = 2e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
 Frame = +3

Query: 279 DLPEPKTRCRNTVQGLNMVTDDRGVVCKRSDLSYSTGCCTSGNQHDCALCD--------- 431
           D P     CRN++QG +++ DDRG VC R+DL  + GCC++G+    A  D         
Sbjct: 100 DQPAQPASCRNSIQGRSLLVDDRGYVCPRADL-LANGCCSAGSGGTTANADAGRLFPCRT 158

Query: 432 -MRDRCCSEYEACVSCCLAP 488
            + +RCC+ YE CV+CCL P
Sbjct: 159 CLPNRCCAVYEYCVACCLNP 178

>ref|NP_788909.1| CG15643-PA [Drosophila melanogaster] gi|7293087|gb|AAF48472.1|
           CG15643-PA [Drosophila melanogaster]
           gi|17944302|gb|AAL48044.1| RE11751p [Drosophila
           melanogaster]
          Length = 212

 Score = 69.3 bits (168), Expect = 3e-11
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = +3

Query: 288 EPKTRCRNTVQGLNMVTDDRGVVCKRSDLSYSTGCCT----SGNQHDCALCDMRDRCCSE 455
           +P+ RCRN+VQG   + D+RG VC+R ++  + GCC         + C  C+    CC  
Sbjct: 72  DPEARCRNSVQGRQWLADERGFVCRREEV-LTNGCCNLELPGIGYYSCRTCNTSTHCCGV 130

Query: 456 YEACVSCCLAP 488
           YE CVSCCL P
Sbjct: 131 YEYCVSCCLHP 141

>ref|XP_132289.1| RIKEN cDNA 2410131K14 [Mus musculus] gi|26355654|dbj|BAC41192.1|
           unnamed protein product [Mus musculus]
          Length = 205

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
 Frame = +3

Query: 291 PKTRCRNTVQGLNMVTDDRGVVCKRSDLSYSTGCC----TSGNQHDCALCDMRDRCCSEY 458
           P  +CRN+VQG +++TD+ G VC+R DL  + GCC     S  Q+ C  C + + CC  Y
Sbjct: 71  PSNQCRNSVQGKHLLTDELGYVCERKDL-LANGCCDVSVPSTKQYCCDGC-LANGCCEAY 128

Query: 459 EACVSCCLAP 488
           E CVSCCL P
Sbjct: 129 EYCVSCCLQP 138

>ref|NP_079014.1| hypothetical protein FLJ21415 [Homo sapiens]
           gi|10437508|dbj|BAB15058.1| unnamed protein product
           [Homo sapiens] gi|18044293|gb|AAH19843.1| Hypothetical
           protein FLJ21415 [Homo sapiens]
          Length = 205

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
 Frame = +3

Query: 291 PKTRCRNTVQGLNMVTDDRGVVCKRSDLSYSTGCCT----SGNQHDCALCDMRDRCCSEY 458
           P  +CRN++QG +++TD+ G VC+R DL  + GCC     S  Q+ C  C   + CCS Y
Sbjct: 71  PSNQCRNSIQGKHLITDELGYVCERKDLLVN-GCCNVNVPSTKQYCCDGC-WPNGCCSAY 128

Query: 459 EACVSCCLAP 488
           E CVSCCL P
Sbjct: 129 EYCVSCCLQP 138

>ref|NP_191498.2| expressed protein [Arabidopsis thaliana]
          Length = 273

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 303 CRNTVQGLNMVTDDRGVVCKRSDLSYSTGCCT-SGNQHDCALCDMRDRCCSEYEACVSCC 479
           CR TVQG  +++DD G VC    L   T CC   G +  C  C++  +CC+ YE CVSCC
Sbjct: 40  CRTTVQGRYLISDDEGNVCDALSLESRTRCCPWKGERFSCHGCNILSQCCNSYEFCVSCC 99

Query: 480 LAP 488
           L P
Sbjct: 100 LNP 102



EST assemble image


clone accession position
1 LC068f03_r AV623786 1 623
2 LC097h04_r AV625790 75 518
3 HC021g04_r AV633520 88 477
4 HC029f04_r AV634128 88 581




Chlamydomonas reinhardtii
Kazusa DNA Research Institute