KCC001901A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001901A_C01 KCC001901A_c01
ggtgctgtgcggtatcacagacagttggaacgaatggatgctgcgaacggggtgcatcga
gtaaggggtggttgcccctgCCCGGCTCGAGTATTGAATGCCGTGCTTCGGCAGGAGTGT
GCAGGGTGGGGCTGGCCCTTGCAATGTACTGCCCATGCGTGGCGGCCTGTGCGTGGTTTG
GCACGCACCAGCCGCAACGAGATAGGGCGCGGCAAAAGGAGAACGCAAGGTTGCCGCTTC
ACGAGGGAATTCTTTAGCGCTTTTACGGAAAGTGTACATGAGCGCAGAGCTGGCTACTCC
CCAACCCCCATGCCTTGGCATACAGGCCGCGGCGTCGCGGTAGGCGTGGTGAAGATGCGA
ATGCTGTTTAGAGTGGACTAGCTCGCTGGAGCTCGCTGTTTGTTGGGCCGTGGGGCTTGC
AGAGAAGGCGCACTTTCGGTGCTGCCGGCTTGATGCGGATGTGTAGACCGCAAGCGGGGG
CTGCGTGGATGCTTTGATGGAGAAGGTATGTGTGCTTGAACCGCGGCGCTGTGCTGGGAT
GACAAGGGCCGATGCTGGTGCGCAAATGGGGCTGCATGAGGTAACTAACCACATTGTTGC
TTTTTGGAGAAGTGCGACAGAGCCTCGGATGCCCTCGTTTGGCCAGTGGCAGTCTGCTTG
CGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001901A_C01 KCC001901A_c01
         (664 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q99946|NG5_HUMAN Protein NG5                                        50  2e-05
ref|NP_112152.1| open reading frame 31 [Mus musculus] gi|2382186...    49  9e-05
ref|NP_085154.2| NG5 protein [Homo sapiens] gi|16549509|dbj|BAB7...    48  1e-04
ref|XP_352404.1| similar to contains similarity to cell wall-pla...    46  4e-04
ref|XP_293223.2| similar to contains similarity to cell wall-pla...    43  0.005

>sp|Q99946|NG5_HUMAN Protein NG5
          Length = 306

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 38/106 (35%), Positives = 49/106 (45%), Gaps = 9/106 (8%)
 Frame = -2

Query: 414 PTAQQTASSSELVHSKQHSHLHHAYRDAAACMPRHGGWGVASSALMYTFRKSAKEFPREA 235
           P A+  A   +   S  H H HH ++   A +PR G  G+ASSA       +A+  P  +
Sbjct: 25  PPAEPPAPPPQAAPSSHHHHHHHYHQSGTATLPRLGAGGLASSA------ATAQRGPSSS 78

Query: 234 ATL-RSPFAAPYLVAAGA----CQTTHRPP----RMGSTLQGPAPP 124
           ATL R P  AP   AAGA    C T  R P       +  +GP PP
Sbjct: 79  ATLPRPPHHAPPGPAAGAPPPGCATLPRMPPDPYLQETRFEGPLPP 124

>ref|NP_112152.1| open reading frame 31 [Mus musculus]
           gi|23821865|sp|O35449|NG5_MOUSE Protein NG5
           gi|7513647|pir||T09067 extensin-like protein NG5 - mouse
           gi|2564955|gb|AAB82012.1| unknown [Mus musculus]
          Length = 306

 Score = 48.5 bits (114), Expect = 9e-05
 Identities = 37/106 (34%), Positives = 48/106 (44%), Gaps = 9/106 (8%)
 Frame = -2

Query: 414 PTAQQTASSSELVHSKQHSHLHHAYRDAAACMPRHGGWGVASSALMYTFRKSAKEFPREA 235
           P A+      +   S  H H HH ++   A +PR G  G+AS+A       SA+  P  +
Sbjct: 25  PPAEPPIPPPQTAPSSHHHHHHHYHQSGTATLPRLGAGGLASAA------ASAQRGPSSS 78

Query: 234 ATL-RSPFAAPYLVAAGA----CQTTHRPP----RMGSTLQGPAPP 124
           ATL R P  AP   AAGA    C T  R P       +  +GP PP
Sbjct: 79  ATLPRPPHHAPPGPAAGAPPPGCATLPRMPPDPYLQETRFEGPLPP 124

>ref|NP_085154.2| NG5 protein [Homo sapiens] gi|16549509|dbj|BAB70821.1| unnamed
           protein product [Homo sapiens]
          Length = 306

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 37/106 (34%), Positives = 49/106 (45%), Gaps = 9/106 (8%)
 Frame = -2

Query: 414 PTAQQTASSSELVHSKQHSHLHHAYRDAAACMPRHGGWGVASSALMYTFRKSAKEFPREA 235
           P A+  A   +   S  H H H+ ++   A +PR G  G+ASSA       +A+  P  +
Sbjct: 25  PPAEPPAPPPQAAPSSHHHHHHYYHQSGTATLPRLGAGGLASSA------ATAQRGPSSS 78

Query: 234 ATL-RSPFAAPYLVAAGA----CQTTHRPP----RMGSTLQGPAPP 124
           ATL R P  AP   AAGA    C T  R P       +  +GP PP
Sbjct: 79  ATLPRPPHHAPPGPAAGAPPPGCATLPRMPPDPYLQETRFEGPLPP 124

>ref|XP_352404.1| similar to contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.5 [Homo sapiens]
          Length = 1000

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 30/83 (36%), Positives = 44/83 (52%), Gaps = 5/83 (6%)
 Frame = -3

Query: 557 QHRPLSSQHSAAVQAHIPS-PSKHPRSPRLRSTHPHQAGSTESAPSLQ---APRPNKQRA 390
           ++R L+S   A+  + + S P +HP  PR   T P    +  +APSL    +PRP   R 
Sbjct: 11  ENRSLASTRVASSLSTVSSLPPQHPHCPRSALTAPQSILTVPTAPSLSTAYSPRPRSPRH 70

Query: 389 PAS*STLNSIRIFTTPTA-TPRP 324
           P S  ++N   + T PTA +PRP
Sbjct: 71  PHSIHSVNICSVLTAPTASSPRP 93

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 13/95 (13%)
 Frame = -3

Query: 569 PFAHQHRPLSSQHSAAVQAHIPSP-------SKHPRSPRLRSTHPHQAGSTE-----SAP 426
           P  H H P S+  +      +P+        S  PRSPR    HPH   S       +AP
Sbjct: 31  PPQHPHCPRSALTAPQSILTVPTAPSLSTAYSPRPRSPR----HPHSIHSVNICSVLTAP 86

Query: 425 SLQAPRPNKQRAPAS*STLNSIRIFTTPTA-TPRP 324
           +  +PRP   R P S  ++N   + T PTA +PRP
Sbjct: 87  TASSPRPKSPRHPHSIHSVNICSVLTAPTAPSPRP 121

 Score = 37.4 bits (85), Expect = 0.20
 Identities = 27/85 (31%), Positives = 40/85 (46%), Gaps = 2/85 (2%)
 Frame = -3

Query: 572 APFAHQHRPLSSQHSAAVQA-HIPSPSKHPRSPRLRSTHPHQAGSTESAPSLQAPRPNKQ 396
           AP A   RP S +H  ++ + +I S    P +P  R  H H+  S  +AP+  +PRP + 
Sbjct: 85  APTASSPRPKSPRHPHSIHSVNICSVLTAPTAPSPRPQHLHRPHSVLTAPTASSPRPQRP 144

Query: 395 RAPAS*STLNSIRIFTTPTA-TPRP 324
               S        +   PTA +PRP
Sbjct: 145 HGVHS--------LLIAPTAPSPRP 161

 Score = 35.8 bits (81), Expect = 0.59
 Identities = 24/82 (29%), Positives = 37/82 (44%)
 Frame = -3

Query: 569 PFAHQHRPLSSQHSAAVQAHIPSPSKHPRSPRLRSTHPHQAGSTESAPSLQAPRPNKQRA 390
           P A   RP   Q    V + + +P+   + P+     PH+  S  +AP+  +PRP +   
Sbjct: 512 PTASSRRP---QRPHRVHSVLTAPTASSQRPQ----RPHRVHSVLTAPTAPSPRPQRPHR 564

Query: 389 PAS*STLNSIRIFTTPTATPRP 324
           P S        + T PTA+ RP
Sbjct: 565 PDS--------VLTAPTASSRP 578

 Score = 33.9 bits (76), Expect = 2.2
 Identities = 31/94 (32%), Positives = 42/94 (43%), Gaps = 14/94 (14%)
 Frame = -3

Query: 563 AHQHRPLS-----SQHSAAVQAHIPSP---SKHPRSPRLRSTHPHQAGSTE-----SAPS 423
           A+  RP S     S HS  + + + +P   S  P+SPR    HPH   S       +AP+
Sbjct: 60  AYSPRPRSPRHPHSIHSVNICSVLTAPTASSPRPKSPR----HPHSIHSVNICSVLTAPT 115

Query: 422 LQAPRPNKQRAPAS*STLNSIRIFTTPTA-TPRP 324
             +PRP     P S        + T PTA +PRP
Sbjct: 116 APSPRPQHLHRPHS--------VLTAPTASSPRP 141

 Score = 33.1 bits (74), Expect = 3.8
 Identities = 24/84 (28%), Positives = 33/84 (38%), Gaps = 7/84 (8%)
 Frame = -3

Query: 554 HRPLSSQHSAAVQAHIPSPSKHPRSPRLRST-------HPHQAGSTESAPSLQAPRPNKQ 396
           HRP SS  ++   +  P     P S    ST        PH   S  + P+  +PRP + 
Sbjct: 652 HRPDSSLAASTASSPRPQRPHRPDSSLAASTASSRPRQRPHGPHSVLTVPTASSPRPQRP 711

Query: 395 RAPAS*STLNSIRIFTTPTATPRP 324
             P S        + T PTA+  P
Sbjct: 712 HRPDS--------VLTVPTASSPP 727

 Score = 32.3 bits (72), Expect = 6.5
 Identities = 33/114 (28%), Positives = 48/114 (41%), Gaps = 16/114 (14%)
 Frame = -3

Query: 611  FSKKQQCG*LPHAAPFA------------HQHRPLSSQHSA--AVQAHIPSPSKHPRSPR 474
            + +++QC   PH    A            H    L + HS   A  A  P P    R  R
Sbjct: 766  YLQRRQCPQRPHRPHSALTASTASCLQRPHCLHSLLTVHSVLTAPTASSPRPQSPHRPHR 825

Query: 473  LRSTHPHQAGSTESAPSLQ-APRPNKQRAPAS*STLNSIRIFTTPTATPR-PVC 318
            + + H      T S+PS + +P P   R P S  T++S  + T PTA+ + P C
Sbjct: 826  VLTVHSVLTAPTASSPSTESSPPPQSLRHPHSVLTVHS--VLTAPTASSQHPQC 877

>ref|XP_293223.2| similar to contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.5 [Homo sapiens]
          Length = 1026

 Score = 42.7 bits (99), Expect = 0.005
 Identities = 31/92 (33%), Positives = 42/92 (44%), Gaps = 13/92 (14%)
 Frame = -3

Query: 560 HQHRPLSSQHSAAVQAHIPSP-------SKHPRSPRLRSTHPHQAGSTE-----SAPSLQ 417
           H H P S+  +      +P+        S  PRSPR    HPH   S       +AP+  
Sbjct: 116 HPHCPRSALTAPQSILTVPTAPSLSTAYSPRPRSPR----HPHSIHSVNICSVLTAPTAS 171

Query: 416 APRPNKQRAPAS*STLNSIRIFTTPTA-TPRP 324
           +PRP   R P S  ++N   + T PTA +PRP
Sbjct: 172 SPRPKSPRHPHSIHSVNICSVLTAPTAPSPRP 203

 Score = 37.4 bits (85), Expect = 0.20
 Identities = 27/85 (31%), Positives = 40/85 (46%), Gaps = 2/85 (2%)
 Frame = -3

Query: 572 APFAHQHRPLSSQHSAAVQA-HIPSPSKHPRSPRLRSTHPHQAGSTESAPSLQAPRPNKQ 396
           AP A   RP S +H  ++ + +I S    P +P  R  H H+  S  +AP+  +PRP + 
Sbjct: 167 APTASSPRPKSPRHPHSIHSVNICSVLTAPTAPSPRPQHLHRPHSVLTAPTASSPRPQRP 226

Query: 395 RAPAS*STLNSIRIFTTPTA-TPRP 324
               S        +   PTA +PRP
Sbjct: 227 HGVHS--------LLIAPTAPSPRP 243

 Score = 33.9 bits (76), Expect = 2.2
 Identities = 31/94 (32%), Positives = 42/94 (43%), Gaps = 14/94 (14%)
 Frame = -3

Query: 563 AHQHRPLS-----SQHSAAVQAHIPSP---SKHPRSPRLRSTHPHQAGSTE-----SAPS 423
           A+  RP S     S HS  + + + +P   S  P+SPR    HPH   S       +AP+
Sbjct: 142 AYSPRPRSPRHPHSIHSVNICSVLTAPTASSPRPKSPR----HPHSIHSVNICSVLTAPT 197

Query: 422 LQAPRPNKQRAPAS*STLNSIRIFTTPTA-TPRP 324
             +PRP     P S        + T PTA +PRP
Sbjct: 198 APSPRPQHLHRPHS--------VLTAPTASSPRP 223



EST assemble image


clone accession position
1 LC089d07_r AV625215 1 501
2 HC020g11_r AV633440 166 636
3 MX242e03_r BP091673 166 664
4 MX209b08_r BP089526 166 434




Chlamydomonas reinhardtii
Kazusa DNA Research Institute