KCC001899A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001899A_C01 KCC001899A_c01
cctTACCAGCGCTACGGCATTAATCTCATAGGACTCAGTCTCGGACACCGGTTCAAGACC
CAACAGCAAGATGGCCCTCACCATGTCCGCCAAGTCCGTGAGCGCCCGCGCCCAGGTGTC
CAGCAAGGCCCAGGCCGCGCCCGCCGTGGCCGTGTCTGGCCGCACCTCGTCCCGCGTGAT
GCCCGCCCCCGCGCTGGCTGCCCGCTCATCGGTCGCCCGCACTCCCCTGGTCGTCTGCGC
CGCGACCGCCACCGCCCCCTCCCCCTCTCTGGCTGACAAGTTCAAGCCCAACGCGATCGC
GCGCGTGCCCGCCACCCAGCAGAAGCAGACCGCCATCATCACCGGCGCCAGCTCGGGCCT
GGGCCTGAACGCCGCCAAGGCCCTGGCCGCCACCGGCGAGTGGCACGTGGTCATGGCCTG
CCGTGACTTCCTCAAGGCCGAGCAGGCTGCCAAGAAGGTCGGCATGCCCGCCGGCTCCTA
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001899A_C01 KCC001899A_c01
         (481 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39617|POR_CHLRE Protochlorophyllide reductase, chloroplast p...   259  9e-69
dbj|BAC87880.1| Protochlorophyllide reductase chloroplast precur...    95  4e-19
sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplas...    94  6e-19
sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplast p...    94  1e-18
dbj|BAC87879.1| Protochlorophyllide reductase chloroplast precur...    93  2e-18

>sp|Q39617|POR_CHLRE Protochlorophyllide reductase, chloroplast precursor (PCR)
           (NADPH-protochlorophyllide oxidoreductase) (POR)
           gi|7484402|pir||S71468 protochlorophyllide reductase (EC
           1.3.1.33) precursor - Chlamydomonas reinhardtii
           gi|1408176|gb|AAB04951.1| NADPH:protochlorophyllide
           oxidoreductase
          Length = 397

 Score =  259 bits (663), Expect = 9e-69
 Identities = 137/137 (100%), Positives = 137/137 (100%)
 Frame = +2

Query: 71  MALTMSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLVVCAATA 250
           MALTMSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLVVCAATA
Sbjct: 1   MALTMSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLVVCAATA 60

Query: 251 TAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDF 430
           TAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDF
Sbjct: 61  TAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDF 120

Query: 431 LKAEQAAKKVGMPAGSY 481
           LKAEQAAKKVGMPAGSY
Sbjct: 121 LKAEQAAKKVGMPAGSY 137

>dbj|BAC87880.1| Protochlorophyllide reductase chloroplast precursor [Physcomitrella
           patens subsp. patens]
          Length = 402

 Score = 95.1 bits (235), Expect = 4e-19
 Identities = 63/142 (44%), Positives = 77/142 (53%), Gaps = 2/142 (1%)
 Frame = +2

Query: 62  NSKMALTMSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLV--V 235
           +S  ALT    +    A V S A     V+V    S+ +      A  +  +R PLV  V
Sbjct: 11  SSLTALTSERATTGITASVQSSAFVGIKVSVCKDASALLK-----AVNAGTSRQPLVEPV 65

Query: 236 CAATATAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVM 415
            A +  AP+ +       NA      T  K T IITGASSGLGL  AK LA +GEWHV+M
Sbjct: 66  RAQSVAAPAST-------NASTSSKKTDTKSTVIITGASSGLGLATAKVLADSGEWHVIM 118

Query: 416 ACRDFLKAEQAAKKVGMPAGSY 481
           ACRDFLKAE+AAK VGMP  +Y
Sbjct: 119 ACRDFLKAERAAKSVGMPKENY 140

>sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplast precursor (PCR A)
           (NADPH-protochlorophyllide oxidoreductase A) (POR A)
           gi|82417|pir||S04783 protochlorophyllide reductase (EC
           1.3.1.33) precursor - barley gi|19061|emb|CAA33879.1|
           unnamed protein product [Hordeum vulgare subsp. vulgare]
           gi|227065|prf||1613434A protochlorophyllide
           oxidoreductase
          Length = 388

 Score = 94.4 bits (233), Expect = 6e-19
 Identities = 61/136 (44%), Positives = 74/136 (53%), Gaps = 3/136 (2%)
 Frame = +2

Query: 83  MSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLVVCAATATAPS 262
           M+ + + +   V  K  +  AVAV          A  L   S   +  L V    ATAPS
Sbjct: 1   MALQLLPSTLSVPKKGSSMGAVAVKDT-------AAFLGVSSKAKKASLAVRTQVATAPS 53

Query: 263 PSLADKFKPNAIARVPA---TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFL 433
           P       P + A  P+   T ++   +ITGASSGLGL AAKALA TG+WHVVMACRDFL
Sbjct: 54  PVTTS---PGSTASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFL 110

Query: 434 KAEQAAKKVGMPAGSY 481
           KA +AAK  GM  GSY
Sbjct: 111 KASKAAKAAGMADGSY 126

>sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplast precursor (PCR)
           (NADPH-protochlorophyllide oxidoreductase) (POR)
           gi|3327258|dbj|BAA31693.1| protochlorophyllide
           oxidoreductase [Marchantia paleacea]
          Length = 458

 Score = 93.6 bits (231), Expect = 1e-18
 Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
 Frame = +2

Query: 74  ALTMSAKSVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVART----PLVVCA 241
           AL++S+ ++S    VS+ A    A  +  R         AL + S+VA      P V+  
Sbjct: 66  ALSVSSAALSQNVSVSNNATKESAF-LGLRMGEVAKFGGALLSVSTVAANLKSKPGVLSV 124

Query: 242 ATATAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMAC 421
              TAP+ ++    KP++      T  K T IITGASSGLGL  AKALA TGEWHV+MAC
Sbjct: 125 NAVTAPAETMN---KPSS----KKTATKSTCIITGASSGLGLATAKALADTGEWHVIMAC 177

Query: 422 RDFLKAEQAAKKVGMPAGSY 481
           RDFLKAE+AA+ VG+P  SY
Sbjct: 178 RDFLKAERAARSVGIPKDSY 197

>dbj|BAC87879.1| Protochlorophyllide reductase chloroplast precursor [Physcomitrella
           patens subsp. patens]
          Length = 402

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 59/139 (42%), Positives = 77/139 (54%), Gaps = 10/139 (7%)
 Frame = +2

Query: 95  SVSARAQVSSKAQAAPAVAVSGRTSSRVMPAPALAARSSVARTPLVVCAATATAPS---- 262
           S  A A +SS   +  +  V+   ++ V P+  L  + SV +   V+  A + + S    
Sbjct: 2   STCAVAALSSPPTSFTSERVTSGITASVQPSAFLGTKISVCKGASVLSRAVSASISRQPL 61

Query: 263 --PSLADKFKPNAIARVPATQQK----QTAIITGASSGLGLNAAKALAATGEWHVVMACR 424
             P  A      A  + P T +K     T IITGASSGLGL  AK LA +GEWHV+MACR
Sbjct: 62  VAPIRAQGVAAPADTKAPTTTKKTDTKSTVIITGASSGLGLATAKVLADSGEWHVIMACR 121

Query: 425 DFLKAEQAAKKVGMPAGSY 481
           DFLKAE+AA+ VGMP  SY
Sbjct: 122 DFLKAERAARAVGMPKDSY 140



EST assemble image


clone accession position
1 LCL086d10_r AV630927 1 483
2 HC020a02_r AV633366 4 421
3 LCL045a02_r AV628640 6 238
4 MXL034f06_r BP095025 12 216
5 MX245d03_r BP091861 20 182




Chlamydomonas reinhardtii
Kazusa DNA Research Institute