KCC001898A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001898A_C01 KCC001898A_c01
acgcggctgtgcgcatcgcggcgtctgtgctgaccaaagccgccattgaccgcggcagca
aagacaacgtgacggtggtcATTGTTGACCTCCGCAACGACCGGCCAGGCGCGCCGCAGG
CTGCGTGTCCGGGGAGCGGCGGCAGCGTGCCCGTTGACTGCCCCTGCGCTGAGGCGGCTG
CCGCCGAGGACAAGGGCGGCTGCACTGCAACGCCGCCGCCGCCGCACCGGACAGTAGGCT
GCTGCTAGACCCTACCTACACTTGCAAATTGCGTAGCCTGGTGACCGGAGGTAGTAGCGG
ACGATGCGTGCGCTGCGTGGCGGCGCGGTCACAAGCAGGTACGCGGCCTTCAGTTTCTTA
TGAATCGCATGGGAGTGTGTGGTTCATCCGTTTGGTTGCTGTGTTGTTTCTCTGGTGCTC
CGCGGCGCTGTTGTGCTAGTGGCTCGGCGAAGCGGACGCGTGCGGCTGTTTTGGGCACTG
ACCGGTTAAAGTTGGGCAAGGCATGCCTTTTCCGCCTATGTATTGCGGGGAGGCAGGGAC
TGAACAACGAGGTCAAGGGGCATTGCACCCAAGAAGAAAAACAGGCTCACACGCGCACTC
GCCGAGTACGTACATTGCACTGAGGCGCTTGACGCGGATACTGTCGCACGGCTGCGGCAT
GGGGTCGCGAAAGCGCGGCATT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001898A_C01 KCC001898A_c01
         (682 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA55484.1| ABI1 [Arabidopsis thaliana]                            39  0.073
gb|AAK59578.1| putative protein phosphatase ABI1 [Arabidopsis th...    39  0.073
ref|NP_194338.1| protein phosphatase ABI1 [Arabidopsis thaliana]...    39  0.073
emb|CAA78663.1| Cpo 17 [Drosophila melanogaster]                       39  0.073
pir||F72544 hypothetical protein APE1642 - Aeropyrum pernix (str...    39  0.073

>emb|CAA55484.1| ABI1 [Arabidopsis thaliana]
          Length = 434

 Score = 38.9 bits (89), Expect = 0.073
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 6   AVRIAASVLTKAAIDRGSKDNVTVVIVDLRNDR 104
           A   AA  L+K AI RGSKDN++VV+VDL+  R
Sbjct: 394 AAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRR 426

>gb|AAK59578.1| putative protein phosphatase ABI1 [Arabidopsis thaliana]
          Length = 434

 Score = 38.9 bits (89), Expect = 0.073
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 6   AVRIAASVLTKAAIDRGSKDNVTVVIVDLRNDR 104
           A   AA  L+K AI RGSKDN++VV+VDL+  R
Sbjct: 394 AAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRR 426

>ref|NP_194338.1| protein phosphatase ABI1 [Arabidopsis thaliana]
           gi|21431817|sp|P49597|P2C1_ARATH Protein phosphatase 2C
           ABI1 (PP2C) (Abscisic acid-insensitive 1)
           gi|7488009|pir||T04263 phosphoprotein phosphatase (EC
           3.1.3.16) ABI1 - Arabidopsis thaliana
           gi|499301|emb|CAA54383.1| ABI1 [Arabidopsis thaliana]
           gi|549981|gb|AAA50237.1| abscisic acid insensitive
           protein gi|4538937|emb|CAB39673.1| protein phosphatase
           ABI1 [Arabidopsis thaliana] gi|7269459|emb|CAB79463.1|
           protein phosphatase ABI1 [Arabidopsis thaliana]
           gi|23297060|gb|AAN13081.1| phosphatase ABI1 [Arabidopsis
           thaliana]
          Length = 434

 Score = 38.9 bits (89), Expect = 0.073
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +3

Query: 6   AVRIAASVLTKAAIDRGSKDNVTVVIVDLRNDR 104
           A   AA  L+K AI RGSKDN++VV+VDL+  R
Sbjct: 394 AAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRR 426

>emb|CAA78663.1| Cpo 17 [Drosophila melanogaster]
          Length = 490

 Score = 38.9 bits (89), Expect = 0.073
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 5/185 (2%)
 Frame = -1

Query: 541 SPCLPAIHRRKRHALPNFNRSVPKTAARVRFAEPLAQQRRGAPEKQHSNQTDEPHTPMRF 362
           SP L    ++++H L  FN++    AA     + L QQ +   ++  + Q    H     
Sbjct: 228 SPQLQQQQQQQQHRLAQFNQA----AAAALLNQHLQQQHQAQQQQHQAQQQSLAHYGGYQ 283

Query: 361 IRN*RPRTCL*PRRHAAHASSATTSGHQATQFASVGRV*QQPTVRCGGGGVAVQPPLSSA 182
           +    P+     ++H   +S +++S H +   ++             GG  A  P  +S 
Sbjct: 284 LHRYAPQQ---QQQHILLSSGSSSSKHNSNTNSNTS----------AGGASAAVPIATSV 330

Query: 181 AAASAQGQSTGTLPPLPGHAACGAPGRSLRRSTMTTVT-----LSLLPRSMAALVSTDAA 17
           AA    G   G+LP  P H +      S   S  TT +      S  P + A   +  +A
Sbjct: 331 AAVPTTG---GSLPDSPAHESHSHESNSATASAPTTPSPAGSVTSAAPTATATAAAAGSA 387

Query: 16  MRTAA 2
             TAA
Sbjct: 388 AATAA 392

>pir||F72544 hypothetical protein APE1642 - Aeropyrum pernix (strain K1)
           gi|5105330|dbj|BAA80643.1| 101aa long hypothetical
           protein [Aeropyrum pernix]
          Length = 101

 Score = 38.9 bits (89), Expect = 0.073
 Identities = 26/63 (41%), Positives = 33/63 (52%)
 Frame = +1

Query: 34  PKPPLTAAAKTT*RWSLLTSATTGQARRRLRVRGAAAACPLTAPALRRLPPRTRAAALQR 213
           P+PP         R +L     + Q RRR R+RGA  +CP  +P   RL   T+AAAL R
Sbjct: 21  PQPPC--------RRTLARHTRSCQCRRRARLRGARTSCPRPSPP-PRLSSETQAAALLR 71

Query: 214 RRR 222
            RR
Sbjct: 72  PRR 74



EST assemble image


clone accession position
1 LC041d10_r AV621825 1 454
2 MX251f12_r BP092257 158 682
3 HC019h05_r AV633358 158 660




Chlamydomonas reinhardtii
Kazusa DNA Research Institute