KCC001897A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001897A_C01 KCC001897A_c01
GAGAGAACTAGTCTCGATTTTTTTTTTTTTTTTTTTCACCAAACGATGGTTACAATCGGC
AGCTCCGGCAGCAGACATTTCACTGCTCCAGAGGTTAACACGCCGGTCGCGCTTCTCTAA
AGCAGCGTGGCCCCGCTTACTGGCTCCATCTTTCATCCATGTAACCATACGGTATCGCCA
TGAACCTGCACCGCCCCTGATTCACAACATATACCATATATAACTATATCAATCGTGCAT
CCAGAACAGTCACAACAACAACACGTAGCTTCCTTCTGTGTAGTGTGGCTACGGCGCAGC
ATCAACGGTACGGAACTCATAAACCCAACATCAACAGCGCCCATGAACCTGTAAAGTATG
CTGTTCATGGGATGCACACTCACACCATTCGTCAAAATCCTCACACGTATAAGCTATCTC
TTCTCGAGTAAGTTGCCTTGCTAGCTAGCTCCATGTGCTTGGTTCAGAAGGAGGGCTTCA
CCTCACCCGTGCGGACCTTGGCATTCCGTACCTTCATGGCTTCCTTCCGCTCCGCCCGCT
GTTGCTGTAGCAGCTCCGAGCGCGACAGGTTCTTCTGGGGTGCAGCCATGGCAGGAGCAG
CCAGCACCACTGCGGCGAGCGGGGCTAGGATGGTGGCGAGGGCAGCACGACGCTGCACGA
CTGGGACGGCCTTGGCGACAGGCTGCACGGTAGCCTTCAGCTCAGCGCGGGCgaggacgg
gggccattgtgcagtcgaggaccgtgtcggaacagcggttttgcaagttggctctaacag
aggacgttgctg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001897A_C01 KCC001897A_c01
         (792 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_733671.1| probable translational initiation factor [Strep...    40  0.043
ref|XP_311676.1| ENSANGP00000000743 [Anopheles gambiae] gi|21295...    38  0.16
gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis]     37  0.36
ref|XP_318252.1| ENSANGP00000023603 [Anopheles gambiae] gi|30174...    37  0.36
dbj|BAC83313.1| unknown protein [Oryza sativa (japonica cultivar...    37  0.47

>ref|NP_733671.1| probable translational initiation factor [Streptomyces coelicolor
           A3(2)] gi|24413891|emb|CAD55362.1| probable
           translational initiation factor [Streptomyces coelicolor
           A3(2)]
          Length = 1033

 Score = 40.0 bits (92), Expect = 0.043
 Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 481 PHPCGPWHSVPSWLPSAPPAVAVAAPSATGSSGVQPWQEQPAPLRRAGLGWWRGQHDAAR 660
           P P  P  + P   P+AP +    APS     G +P   +P   R +G G  RGQ     
Sbjct: 137 PAPAAPEFTAPPAAPAAP-STPAPAPSGPKPGGARPGAPKPGGARPSGPGQDRGQQGGQ- 194

Query: 661 LGRPWRQAAR*PSAQR--GRGRGPLCSRGPCRNSGFA 765
            GRP  Q    P AQR  GR  GP     P  + G A
Sbjct: 195 -GRPGGQRPGAP-AQRPGGRPGGPRPGNNPFTSGGNA 229

>ref|XP_311676.1| ENSANGP00000000743 [Anopheles gambiae] gi|21295171|gb|EAA07316.1|
           ENSANGP00000000743 [Anopheles gambiae str. PEST]
          Length = 209

 Score = 38.1 bits (87), Expect = 0.16
 Identities = 23/48 (47%), Positives = 27/48 (55%)
 Frame = -3

Query: 724 APVLARAELKATVQPVAKAVPVVQRRAALATILAPLAAVVLAAPAMAA 581
           APV+ARA   A   P+A + PVV  RA      APLAA    AP +AA
Sbjct: 164 APVVARAAYTAAAAPLAYSAPVVAARA------APLAAAAYTAPVVAA 205

>gb|AAH46717.1| Similar to zinc finger protein 162 [Xenopus laevis]
          Length = 571

 Score = 37.0 bits (84), Expect = 0.36
 Identities = 25/79 (31%), Positives = 32/79 (39%), Gaps = 8/79 (10%)
 Frame = +1

Query: 475 ASPHPCGPWHSVPSWL--PSAPPAVAVAAPSATGSSGVQPWQEQP--APLRRAGLGWWRG 642
           + PHP G  HS P  L  P  PP+     P    +  + PWQ+Q   AP +  G   W  
Sbjct: 402 SGPHPMGLLHSHPMGLMPPPPPPSGPAPPPPPPSAPSLPPWQQQATGAPPQTGGHLPWHQ 461

Query: 643 QHDAARLGR----PWRQAA 687
                  G     PW+Q A
Sbjct: 462 SSPTTVSGTASLPPWQQGA 480

>ref|XP_318252.1| ENSANGP00000023603 [Anopheles gambiae] gi|30174992|gb|EAA13437.2|
            ENSANGP00000023603 [Anopheles gambiae str. PEST]
          Length = 1221

 Score = 37.0 bits (84), Expect = 0.36
 Identities = 27/85 (31%), Positives = 32/85 (36%), Gaps = 7/85 (8%)
 Frame = +1

Query: 505  SVPSWLPSAP----PAVAVAAPSATGSSGVQPWQEQPAPLRRAGL---GWWRGQHDAARL 663
            +V  WL SAP    P VA        ++G+Q W+  P       L    WW G H  AR 
Sbjct: 929  TVLHWLNSAPNRWKPFVANRVAKIQQTAGIQCWKHVPGSTPEKLLVCERWWHGPHWLARN 988

Query: 664  GRPWRQAAR*PSAQRGRGRGPLCSR 738
               W Q    PS         L SR
Sbjct: 989  SEEWPQNTPSPSEDESAEEEKLSSR 1013

>dbj|BAC83313.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 171

 Score = 36.6 bits (83), Expect = 0.47
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
 Frame = -1

Query: 750 PTRSSTAQWPPSSPALS*RLPCSLSPRPSQSCSVVLPSPPS*PRSPQWCWLLLPWLHPRR 571
           P R      PPS+P     LP  +SP  +++ S     PP  P  P  C  LLP L P  
Sbjct: 37  PCRPRQPPQPPSAPPRQPTLPPGVSPLTARASSRAPCRPPPPPAVPATC-CLLPRLPPPA 95

Query: 570 TC---------RARSCYSNSGRSGRKP*RYGMPRSARVR*SPPSEPST 454
           +C         R+ +C + +  S     R   PR      SP  +P+T
Sbjct: 96  SCYHLRRCELRRSETCLAMTSASSAS--RRTAPRVPPPPESPAPDPAT 141



EST assemble image


clone accession position
1 MX217g10_r BP090033 1 404
2 HC019g11_r AV633352 109 600
3 HC038a03_r AV634795 440 900




Chlamydomonas reinhardtii
Kazusa DNA Research Institute