KCC001892A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001892A_C02 KCC001892A_c02
tgaTAAGCTTATTACATACTAGCAGCATGCGTGAATGAAGAGACTTTGAGGCGTTTTGCT
TGCAAGCGGGTGGTTCCCGGCGCGCCACAACTAACACTACTCGCAAGGTTAACATCGCGC
GCTCAAGTGGTCTCGCATAGCAACATGGCGGACTGGAAAGAACAGTTGAAGATTGCGTTG
GACGGCGTCACCTCGGGCGGCAAATTTGCGGTGACCGGTACCGTGGATAGTCCGCTGCCC
GAGATCGCTGTTCGTGGTGTGGGCAAGCTGGCGCTTCCCATCGATGCTGGCCAGGCGGAG
GACCTGGTCTTTGCGGGCATGCCCGCGCCCTTCGGCAAGGGCTCCAAGACGGTCCTGGAC
CCTGCGGTGCGCAAAGCCATCCAGATTGAGGCGGCACGTGTTCGCTTTTCACAGGACTGG
GACGCAACCGTGCGCCGCCTCACAGCCGATGTAGCTGCCGCGCTGCTGGGTGTGTACGGC
TGCGGCGCGGTGGCAGGAGTCGAGGCCCGGCTGTACAAGCTGCTGGTGTACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001892A_C02 KCC001892A_c02
         (532 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_332104.1| predicted protein [Neurospora crassa] gi|289201...    78  6e-14
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    45  6e-04
ref|ZP_00007403.1| COG1429: Cobalamin biosynthesis protein CobN ...    44  0.001
ref|XP_162813.1| hypothetical protein XP_162813 [Mus musculus]         43  0.003
ref|XP_308046.1| ENSANGP00000019335 [Anopheles gambiae] gi|21291...    42  0.004

>ref|XP_332104.1| predicted protein [Neurospora crassa] gi|28920138|gb|EAA29519.1|
           predicted protein [Neurospora crassa]
          Length = 934

 Score = 78.2 bits (191), Expect = 6e-14
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
 Frame = +1

Query: 157 KEQLKIALDGVTSGGKFAVTGTVDSPLPE-IAVRGVGKLALPIDAGQAEDLVFAGMPAPF 333
           K+ L+ ALD V   G FA    +    P+ + V GVG +A+P+   QA  L+     AP+
Sbjct: 62  KDDLRKALDNVKVAGSFASFRKLSRTPPDGLYVDGVGDVAMPLSETQARQLIAKARQAPY 121

Query: 334 GKGSKTVLDPAVRKAIQIEAARVRF-SQDWDATVRRLTADVAAALLGVYGCGAVAGVEAR 510
           G+GS+T++D +VR   +I+AA+  F +Q W   VR L + VAA L      G  + + A 
Sbjct: 122 GRGSETIVDTSVRNTWEIDAAQFSFNNQRWPGYVRHLCSHVAADL------GIKSPIRAE 175

Query: 511 LYKLLVY 531
           +YK+L+Y
Sbjct: 176 IYKMLIY 182

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 4/174 (2%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAA-ATSAVRRRT--VASQSCEKRTRAASIWMALRTAGS 357
           T++  +RA+TPATA  P TP++AA A  A    T   A+ +    T A +   A     +
Sbjct: 160 TAATAARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAATAATAATPA 219

Query: 356 RTVLEPLPKGAGMPAKTRSSAWPASMGSASLPTPRTAISGSGLSTVPVTANLPPEVTPSN 177
           R      P  A  PA   + A  A+  +A+ PT  T    +  +T    A L    TP+ 
Sbjct: 220 RAARAATPATAPTPATAATPATAAT--AATAPTAATPARAARAATPATAATLATAATPAT 277

Query: 176 -AIFNCSFQSAMLLCETT*ARDVNLASSVSCGAPGTTRLQAKRLKVSSFTHAAS 18
            A    +   A      T AR    A+  +   P T    A     ++   AA+
Sbjct: 278 PATPATAATDATAATAATPARAATPATPATAATPATPATAATAATAATAATAAT 331

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 1/119 (0%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTV 348
           T +  +RA+TPATA  P T ++ AAT+A       + +  +  RAA+   A   A + T 
Sbjct: 331 TPARAARAATPATAATPAT-AATAATAATAATAATAATPARAARAATPATAATAATAATA 389

Query: 347 LEPLPKGAGMPAKTRSSAWPASMGSASLP-TPRTAISGSGLSTVPVTANLPPEVTPSNA 174
                  A  PA+   +A PA+  + + P TP TA + +  +T    A      T + A
Sbjct: 390 ATAAT--AATPARAARAATPATPATPATPATPATAATAATAATAATAATAATAATAATA 446

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 34/119 (28%), Positives = 54/119 (44%), Gaps = 1/119 (0%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTV 348
           T +  + A+TPATA  P T ++AA T+A       + +  +  RAA+   A   A + T 
Sbjct: 57  TEATAATAATPATAATPATAATAATTAATAATAATAATPARAARAATPATAATPATAATA 116

Query: 347 LEPLPKG-AGMPAKTRSSAWPASMGSASLPTPRTAISGSGLSTVPVTANLPPEVTPSNA 174
                   A  PA+  + A  A+  +A+  TP TA + +  +T    A      TP+ A
Sbjct: 117 ATAATAATAETPARAATPATAATPATAA--TPATAATAATAATSATAATAARAATPATA 173

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTV 348
           T +  +RA+TPATAP P T ++  AT+A       + +  +  RAA+   A   A + T 
Sbjct: 217 TPARAARAATPATAPTPAT-AATPATAATAATAPTAATPARAARAATPATAATLATAATP 275

Query: 347 LEP-LPKGAGMPAKTRSSAWPASMGSASLP-TPRTAISGSGLSTVPVTANLPPEVTPSNA 174
             P  P  A   A   ++A PA   + + P T  T  + +  +T    A      TP+ A
Sbjct: 276 ATPATPATAATDATAATAATPARAATPATPATAATPATPATAATAATAATAATAATPARA 335

Query: 173 IFNCSFQSAMLLCETT*ARDVNLASSVSCGAPGTTRLQAKRLKVSSFTHAAS 18
                 ++A      T A     A++ +     T    A+  + ++   AA+
Sbjct: 336 A-----RAATPATAATPATAATAATAATAATAATAATPARAARAATPATAAT 382

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 40/167 (23%), Positives = 65/167 (37%), Gaps = 2/167 (1%)
 Frame = -3

Query: 512 SRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTVLEPLP 333
           +RA+TPATA  P T ++ A  +       A+ +    T A     A  TA +        
Sbjct: 32  ARAATPATAATPATAATPATAATAATEATAATAATPATAATPATAA--TAATTAATAATA 89

Query: 332 KGAGMPAKTRSSAWPASMGS-ASLPTPRTAISGSGLSTVPVTANLPPEVTPSNAIFNCSF 156
             A  PA+   +A PA+  + A+  T  TA + +   T    A      TP+ A    + 
Sbjct: 90  ATAATPARAARAATPATAATPATAATAATAATAATAETPARAATPATAATPATAATPATA 149

Query: 155 QSAMLLC-ETT*ARDVNLASSVSCGAPGTTRLQAKRLKVSSFTHAAS 18
            +A       T A     A+  +   P T    A+  + ++   AA+
Sbjct: 150 ATAATAATSATAATAARAATPATAATPATPATAARAARAATPATAAT 196

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 5/175 (2%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAA-ATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRT 351
           T++  + A+TPATA    T ++AA A +     T A+ +    T A +   A     +R 
Sbjct: 39  TAATPATAATPATAATAATEATAATAATPATAATPATAATAATTAATAATAATAATPARA 98

Query: 350 VLEPLPKGAGMPAKTRSSAWPASMGSASLP----TPRTAISGSGLSTVPVTANLPPEVTP 183
                P  A  PA   ++A  A+  +A  P    TP TA + +  +T    A      T 
Sbjct: 99  ARAATPATAATPATAATAATAATAATAETPARAATPATAATPATAATPATAATAATAATS 158

Query: 182 SNAIFNCSFQSAMLLCETT*ARDVNLASSVSCGAPGTTRLQAKRLKVSSFTHAAS 18
           + A    + ++A      T A     A +     P T    A     ++   AA+
Sbjct: 159 ATAA--TAARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAAT 211

 Score = 38.5 bits (88), Expect = 0.055
 Identities = 38/154 (24%), Positives = 62/154 (39%), Gaps = 3/154 (1%)
 Frame = -3

Query: 503 STPATAPQPYTPSSAA-ATSAVRRRTVA--SQSCEKRTRAASIWMALRTAGSRTVLEPLP 333
           +TPATA  P TP++AA A +A    T A  +++    T A +   A     +        
Sbjct: 303 ATPATAATPATPATAATAATAATAATAATPARAARAATPATAATPATAATAATAATAATA 362

Query: 332 KGAGMPAKTRSSAWPASMGSASLPTPRTAISGSGLSTVPVTANLPPEVTPSNAIFNCSFQ 153
             A  PA+   +A PA+  +A+  T  TA + +  +T    A      TP+      +  
Sbjct: 363 ATAATPARAARAATPATAATAA--TAATAATAATAATPARAARAATPATPATPATPATPA 420

Query: 152 SAMLLCETT*ARDVNLASSVSCGAPGTTRLQAKR 51
           +A        A     A++ +  A   T  +A R
Sbjct: 421 TAATAATAATAATAATAATAATAATAPTPARAAR 454

 Score = 37.7 bits (86), Expect = 0.093
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAA--ATSAVRRRTVASQSCEKRTRAASIWMALRTAGSR 354
           T++  + ++T ATA +  TP++AA  AT A   R   + +      AA+   A   A + 
Sbjct: 151 TAATAATSATAATAARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAA 210

Query: 353 TVLEPLPKGAGMPAKTRSSAWPASMGS-ASLPTPRTAISGSGLSTVPVTANLPPEVTPSN 177
           T        A  PA+   +A PA+  + A+  TP TA + +   T    A      TP+ 
Sbjct: 211 TAAT-----AATPARAARAATPATAPTPATAATPATAATAATAPTAATPARAARAATPAT 265

Query: 176 A 174
           A
Sbjct: 266 A 266

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
 Frame = -3

Query: 506 ASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTVLEPLPKG 327
           A+TPATA  P T ++AA  +       A+++    T A     A     +R         
Sbjct: 137 AATPATAATPATAATAATAATSATAATAARAATPATAATPATPATAARAARAATPATAAT 196

Query: 326 AGMPAKTRSSAWPASMGSASLP-------TPRTA---ISGSGLSTVPVTANLPPEVTPSN 177
           A   A   ++A  A+  +A+ P       TP TA    + +  +T    A  P   TP+ 
Sbjct: 197 AATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAATAATAPTAATPAR 256

Query: 176 A 174
           A
Sbjct: 257 A 257

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 7/177 (3%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTV 348
           T +  +RA+TPATA  P T ++AA  +        + + E   RAA+   A   A + T 
Sbjct: 94  TPARAARAATPATAATPATAATAATAA-------TAATAETPARAATPATAATPATAAT- 145

Query: 347 LEPLPKGAGMPAKTRSSAWPASMGSASLP-------TPRTAISGSGLSTVPVTANLPPEV 189
               P  A   A   +SA  A+   A+ P       TP TA   +  +T    A      
Sbjct: 146 ----PATAATAATAATSATAATAARAATPATAATPATPATAARAARAATPATAATAATAA 201

Query: 188 TPSNAIFNCSFQSAMLLCETT*ARDVNLASSVSCGAPGTTRLQAKRLKVSSFTHAAS 18
           T + A       +A      T AR    A+  +   P T    A     ++   AA+
Sbjct: 202 TAATAA-----TAATAATAATPARAARAATPATAPTPATAATPATAATAATAPTAAT 253

 Score = 35.8 bits (81), Expect = 0.35
 Identities = 28/111 (25%), Positives = 45/111 (40%)
 Frame = -3

Query: 506 ASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTVLEPLPKG 327
           A+TPATA    T ++AA  +       A+++    T A +   A     +          
Sbjct: 344 AATPATAATAATAATAATAATAATPARAARAATPATAATAATAATAATAATAATPARAAR 403

Query: 326 AGMPAKTRSSAWPASMGSASLPTPRTAISGSGLSTVPVTANLPPEVTPSNA 174
           A  PA   + A PA+  +A+  T  TA + +  +T    A      TP+ A
Sbjct: 404 AATPATPATPATPATPATAA--TAATAATAATAATAATAATAATAPTPARA 452

 Score = 34.7 bits (78), Expect = 0.79
 Identities = 32/124 (25%), Positives = 51/124 (40%), Gaps = 4/124 (3%)
 Frame = -3

Query: 527 TSSLYSRASTPATAPQPYTPSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTV 348
           T++  + A+TPA A +  TP++ A  +       A+ +    T A +   A     +   
Sbjct: 388 TAATAATAATPARAARAATPATPATPATPATPATAATAATAATAATA---ATAATAATAA 444

Query: 347 LEPLPKGAGMPAKTRSSAWPASM----GSASLPTPRTAISGSGLSTVPVTANLPPEVTPS 180
             P P  A   A   + A PA+      +A+  T  TA + +  ST P TA  P      
Sbjct: 445 TAPTPARAARAATPATGATPATAPTAGTAATAATAATAATPARAST-PATAATPVTAATP 503

Query: 179 NAIF 168
            A+F
Sbjct: 504 AAVF 507

>ref|ZP_00007403.1| COG1429: Cobalamin biosynthesis protein CobN and related
            Mg-chelatases [Rhodobacter sphaeroides]
          Length = 1288

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 35/97 (36%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
 Frame = -1

Query: 502  RLLPPRRSRTHPAARQLHRL*GGARLRPSPVKSEHVPPQSGWLCAPQGPGPSWSPCRRAR 323
            R   PRR R  P A       G  R RPS       P   GW C   GP  +       R
Sbjct: 902  RRAAPRRRRLRPCA-------GSGRDRPSDGAGPCRP--RGWFCRGAGPARARGGALSPR 952

Query: 322  ACPQRPGPPPGQHRWEAP--ACPHHEQR-SRAADYPR 221
              P RP P P  HR   P  AC H   R  R  D PR
Sbjct: 953  RHPPRPAPRPQPHRGAEPHRACAHRRSRLGRWHDAPR 989

>ref|XP_162813.1| hypothetical protein XP_162813 [Mus musculus]
          Length = 333

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 38/127 (29%), Positives = 51/127 (39%), Gaps = 7/127 (5%)
 Frame = -1

Query: 508 GPRLLPPRRSRTHPAARQLHRL*GGARLRPSPVKSEHVPPQSGWLCAP------QGPGPS 347
           GP+  PP+     P   Q     GG +  P P K +  PPQ G   +P      QGP P 
Sbjct: 134 GPQQSPPK-----PGNHQAPPPQGGLQGPPRPGKQQGPPPQGGPQQSPPKPGNQQGPPPQ 188

Query: 346 WSPCRRARACPQRPGPPPGQHRWEAPACPHHEQ-RSRAADYPRYRSPQICRPR*RRPTQS 170
             P +R      + GPPP Q   + P  P ++Q R      P   +P   +P   RPT  
Sbjct: 189 GGPQQRPPKPGNQQGPPP-QGGPQGPPMPGNQQTRPNPTGRPSAETPSAWKP--ARPTPK 245

Query: 169 STVLSSP 149
                +P
Sbjct: 246 GRSSGTP 252

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 29/97 (29%), Positives = 37/97 (37%), Gaps = 6/97 (6%)
 Frame = -1

Query: 520 ACTAGPRLLPPRRSRTHPAARQLHRL*GGARLRPSPVKSEHVPPQSGWLCAP------QG 359
           A   GP+  PP+         Q     GG +  P P   +  PPQ G L  P      QG
Sbjct: 18  ATCGGPQQSPPQPGNQQGPPPQ-----GGPQGPPMPGNQQGPPPQGGPLQRPPQPGNQQG 72

Query: 358 PGPSWSPCRRARACPQRPGPPPGQHRWEAPACPHHEQ 248
           P P   P +R        GPPP     + P  P ++Q
Sbjct: 73  PPPQGGPQQRPPQPGNHQGPPPLGGPQQRPPKPGNQQ 109

 Score = 35.0 bits (79), Expect = 0.60
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
 Frame = -1

Query: 421 PSPVKSEHVPPQSGWLCAP-----QGPGPSWSPCRRARACPQRPGPPPGQHRWEAPACPH 257
           P P   +  PPQ G    P     QGP P   P +R      + GPPP     + P  P 
Sbjct: 28  PQPGNQQGPPPQGGPQGPPMPGNQQGPPPQGGPLQRPPQPGNQQGPPPQGGPQQRPPQPG 87

Query: 256 HEQRSRAADYPRYRSPQ 206
           + Q       P+ R P+
Sbjct: 88  NHQGPPPLGGPQQRPPK 104

 Score = 31.2 bits (69), Expect = 8.7
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
 Frame = -1

Query: 439 GGARLRPSPVKSEHVPPQSGWLCAP------QGPGPSWSPCRRARACPQRPGPPPGQHRW 278
           GG +  P    +   PP  G L  P      QGP P   P +       + GPPP     
Sbjct: 133 GGPQQSPPKPGNHQAPPPQGGLQGPPRPGKQQGPPPQGGPQQSPPKPGNQQGPPPQGGPQ 192

Query: 277 EAPACPHHEQ 248
           + P  P ++Q
Sbjct: 193 QRPPKPGNQQ 202

>ref|XP_308046.1| ENSANGP00000019335 [Anopheles gambiae] gi|21291511|gb|EAA03656.1|
           ENSANGP00000019335 [Anopheles gambiae str. PEST]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
 Frame = -3

Query: 470 PSSAAATSAVRRRTVASQSCEKRTRAASIWMALRTAGSRTVLEPLPKGAGMPAKTRSSA- 294
           PS+ AA +A   +T AS     RT+AAS     +TA S +      K A   + TR++A 
Sbjct: 102 PSTDAAKAAPATKTTASSVAAARTKAASATSTTKTATSAS---STTKAASASSVTRTAAP 158

Query: 293 --WPASMGSASLPTPRTAISGSGLSTVPVTANLPPEVTPSNAIFNCSFQSAMLLCETT*A 120
                S G+A  P+ R       LST   T        PS+A+ + S  S      TT A
Sbjct: 159 KPTTGSAGAAPKPSSR-------LSTASSTTTRTVTSRPSSAVSSASVPSKTSTTTTTTA 211

Query: 119 -RDVNLASSVSCGAPGTTRLQAKRLKVSS 36
            R V   SS++ G   T     +  K ++
Sbjct: 212 KRTVAAKSSLTNGTSATDGAATRTTKTTT 240



EST assemble image


clone accession position
1 MXL043d12_r BP095537 1 290
2 MXL043d05_r BP095534 4 382
3 HC018h12_r AV633285 22 479
4 LCL041a12_r AV628392 30 533
5 MX256e03_r BP092599 44 441




Chlamydomonas reinhardtii
Kazusa DNA Research Institute