KCC001890A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001890A_C01 KCC001890A_c01
agcaaacGTCAATCCAAATACTTTTTAACAGCATGAACCCCAACCACTCGCACGGCGAGG
ACTGCCTATGTGCGTGTTCTATGATATCTGTTCTCATTTGAGCTTTCGCTCTTTTAAATT
CAACTCAGCAAACCGATACACCGATGTCTCCTTTTCTGTGCAGGGGACTCGACCATGGCT
GGTGCGGGCGCGGCGCTGAAGGCAAGCTTCATCAGTGGCGGCTTATATTATGCAGCAATG
AAATACAGTCCATTCTTCCGATACAGTTTCAATGCGAGCGCGCGAACAGCGTTAACCATC
ATGCCCATCTTCTACACGGGCTACCTGAAGATGGAGCTCAGCATGCACAAGTGCATGCAG
GACGTCAAGCCGGAGTATGTGGCGATTGATGACGATGACGAGCACAAAGTCAACACCTCG
GGGCGGCGGCACTACTGAGCTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001890A_C01 KCC001890A_c01
         (443 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_630578.1| putative dehydrogenase [Streptomyces coelicolor...    33  0.68
emb|CAD38644.1| PAH ring-hydroxylating dioxygenase, small subuni...    33  1.2
gb|AAK69592.1| C31538 [Mungbean yellow mosaic India virus-[Bangl...    32  2.6
gb|AAH13757.1|AAH13757 Unknown (protein for IMAGE:4525041) [Homo...    31  3.4
ref|XP_057296.2| similar to CG32687-PA [Homo sapiens]                  31  3.4

>ref|NP_630578.1| putative dehydrogenase [Streptomyces coelicolor A3(2)]
           gi|7480581|pir||T34726 probable dehydrogenase -
           Streptomyces coelicolor gi|3861428|emb|CAA22033.1|
           putative dehydrogenase [Streptomyces coelicolor A3(2)]
          Length = 629

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +3

Query: 192 GAEGKLHQWRLILCSNEIQSILPIQFQCERANSVNHHAHLLHGLPEDGAQHAQVHAGRQ 368
           G EG L   RL+L +  +  +LPI         V  HAH   GLPE  A + + H  RQ
Sbjct: 95  GGEGTLAYDRLVLAAGSVNKLLPIP-------GVAEHAHGFRGLPE--ALYLRDHVTRQ 144

>emb|CAD38644.1| PAH ring-hydroxylating dioxygenase, small subunit 2 [Mycobacterium
           sp. 6PY1]
          Length = 172

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 198 EGKLHQWRLILCSNEIQSILPIQFQCERANSVNHHAHLLH 317
           +G+ H W L LC+ +I  I+P++   ERAN   +   + H
Sbjct: 28  DGRFHDW-LELCAEDIHYIIPVRVSRERANGDGNSTTMTH 66

>gb|AAK69592.1| C31538 [Mungbean yellow mosaic India virus-[Bangladesh]]
          Length = 134

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 223 LYYAAMKYSPFFRYSFNASARTALTIMPIFYTGYLKMELSMHKCMQDVK 369
           L +  M +SP       A +R  +T M I +   LK  L MHKC  D+K
Sbjct: 27  LSFKVMHHSPI-----QAGSRMVVTKMRIMFNHGLKKTLGMHKCFLDLK 70

>gb|AAH13757.1|AAH13757 Unknown (protein for IMAGE:4525041) [Homo sapiens]
          Length = 403

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 222 LILCSNEIQSILPIQFQCERANSVNHHAHLLHGLPED 332
           L+LC N+IQSI P   Q     S++ H +LL  LP +
Sbjct: 226 LVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPRE 262

>ref|XP_057296.2| similar to CG32687-PA [Homo sapiens]
          Length = 429

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 222 LILCSNEIQSILPIQFQCERANSVNHHAHLLHGLPED 332
           L+LC N+IQSI P   Q     S++ H +LL  LP +
Sbjct: 252 LVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPRE 288



EST assemble image


clone accession position
1 MX056e07_r BP088291 1 443
2 HC018a01_r AV633202 8 200




Chlamydomonas reinhardtii
Kazusa DNA Research Institute