Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001887A_C01 KCC001887A_c01
(518 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_217398.1| frr [Mycobacterium tuberculosis H37Rv] gi|15842... 72 4e-12
ref|NP_623024.1| Ribosome recycling factor [Thermoanaerobacter t... 71 9e-12
ref|ZP_00072556.1| COG0233: Ribosome recycling factor [Trichodes... 70 1e-11
ref|NP_252343.1| ribosome recycling factor [Pseudomonas aerugino... 70 2e-11
dbj|BAC84660.1| putative Ribosome recycling factor, chloroplast ... 69 3e-11
>ref|NP_217398.1| frr [Mycobacterium tuberculosis H37Rv] gi|15842423|ref|NP_337460.1|
ribosome recycling factor [Mycobacterium tuberculosis
CDC1551] gi|31794058|ref|NP_856551.1| RIBOSOME RECYCLING
FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF)
[Mycobacterium bovis subsp. bovis AF2122/97]
gi|1710712|sp|Q10794|RRF_MYCTU Ribosome recycling factor
(Ribosome releasing factor) (RRF) gi|7443593|pir||E70924
probable ribosome recycling factor - Mycobacterium
tuberculosis (strain H37RV) gi|1403402|emb|CAA98358.1|
frr [Mycobacterium tuberculosis H37Rv]
gi|13882725|gb|AAK47274.1| ribosome recycling factor
[Mycobacterium tuberculosis CDC1551]
gi|31619653|emb|CAD96593.1| RIBOSOME RECYCLING FACTOR
FRR (RIBOSOME RELEASING FACTOR) (RRF) [Mycobacterium
bovis subsp. bovis AF2122/97]
Length = 185
Score = 72.0 bits (175), Expect = 4e-12
Identities = 31/59 (52%), Positives = 45/59 (75%)
Frame = +2
Query: 329 EAKKDADERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPDA 505
EA DA+E+M+K +AV D +TIRTGRANP + +IT+DY+GA TP+ Q+ ++ VP+A
Sbjct: 4 EALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEA 62
>ref|NP_623024.1| Ribosome recycling factor [Thermoanaerobacter tengcongensis]
gi|22001937|sp|Q8RA24|RRF_THETN Ribosome recycling
factor (Ribosome releasing factor) (RRF)
gi|20516416|gb|AAM24628.1| Ribosome recycling factor
[Thermoanaerobacter tengcongensis]
Length = 184
Score = 70.9 bits (172), Expect = 9e-12
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +2
Query: 338 KDADERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPD 502
KD++ERMKK L V+ IR GRANPA+LD+ITV+Y+G PTPL ++ T+T P+
Sbjct: 6 KDSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPE 60
>ref|ZP_00072556.1| COG0233: Ribosome recycling factor [Trichodesmium erythraeum
IMS101]
Length = 182
Score = 70.5 bits (171), Expect = 1e-11
Identities = 28/57 (49%), Positives = 44/57 (77%)
Frame = +2
Query: 338 KDADERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPDAS 508
K+A+E+M+K + + FNT+RTGRAN ++LD++ V+Y+G+PT LK M + +PDAS
Sbjct: 4 KEAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDAS 60
>ref|NP_252343.1| ribosome recycling factor [Pseudomonas aeruginosa PA01]
gi|6226046|sp|O82853|RRF_PSEAE Ribosome recycling factor
(Ribosome releasing factor) (RRF)
gi|11352508|pir||H83188 ribosome recycling factor PA3653
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|3417449|dbj|BAA32345.1| ribosome recycling factor
[Pseudomonas aeruginosa]
gi|9949814|gb|AAG07041.1|AE004785_5 ribosome recycling
factor [Pseudomonas aeruginosa PAO1]
Length = 185
Score = 69.7 bits (169), Expect = 2e-11
Identities = 33/59 (55%), Positives = 42/59 (70%)
Frame = +2
Query: 329 EAKKDADERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLKQMGTVTVPDA 505
E KK+A ERM K L +G F IRTGRA+P+ILD + V Y+GA TPL+Q+ VTV D+
Sbjct: 4 EIKKEAQERMGKTLEALGHAFAKIRTGRAHPSILDSVMVSYYGADTPLRQVANVTVEDS 62
>dbj|BAC84660.1| putative Ribosome recycling factor, chloroplast precursor [Oryza
sativa (japonica cultivar-group)]
Length = 266
Score = 69.3 bits (168), Expect = 3e-11
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Frame = +2
Query: 305 ADVQKIAAEA---KKDADERMKKCLAVVGDGFNTIRTGRANPAILDKITVDYFGAPTPLK 475
A +++I AE + A ERM+K + V + FNT+RTGRANPA+LD+I V+Y+G P LK
Sbjct: 74 ATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLK 133
Query: 476 QMGTVTVPDAS 508
+ + PDA+
Sbjct: 134 SIAQINTPDAT 144
