KCC001885A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001885A_C01 KCC001885A_c01
cattaagGCGTTGCACTCTTTGCGCCCTCACGTCCTGAAGACATTTGGCATCTGGCTTGT
TCTTTTTAGCCCGGAACCATGCTCCAAGCGCAACGTGTCGGTCGCGCCTGCACCAATGCA
AGGCAGCAGCAGCCTGTTGCCCGTCCTGCCATGCTGGCCGGCCGGGCGCACCTGACCTCG
CCGGCGTTGCGGTCGCGCCCGGCTCCCGGGACCGCGACGTTCACGCAGCCTAAGCAGCAG
CCTAAGCCCGTTGTCCACACGCAAGCAGCGGCGGGCGCTGGCGCCTCCGCGACGCCGGCT
CCCCAGAGCTCGGGCGGCAACAGCACGTTCACGCAGGCCGTGTTCAACGTGGTGAACGTG
ATGATGGGCGTGGGTGTGCTGTCGCTGCCCTTCGCGCTCAAGAGCAGCGGCTGGGTGGGC
CTGCTGGTGCTGTGGGTCATGGGCGTCGCCACCAACTACACAGCAAAGGCGCTGTGCGAG
TGCGCTGACGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001885A_C01 KCC001885A_c01
         (493 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191043.1| amino acid transporter family [Arabidopsis thal...    65  3e-10
ref|NP_850312.1| amino acid transporter family [Arabidopsis thal...    63  2e-09
gb|AAK92736.1| unknown protein [Arabidopsis thaliana]                  63  2e-09
pir||T02589 hypothetical protein T16B24.23 - Arabidopsis thalian...    63  2e-09
pir||E84813 hypothetical protein At2g39130 [imported] - Arabidop...    63  2e-09

>ref|NP_191043.1| amino acid transporter family [Arabidopsis thaliana]
           gi|7486337|pir||T06737 hypothetical protein F28P10.190 -
           Arabidopsis thaliana gi|4678310|emb|CAB41101.1| putative
           protein [Arabidopsis thaliana]
          Length = 571

 Score = 65.5 bits (158), Expect = 3e-10
 Identities = 38/107 (35%), Positives = 52/107 (48%)
 Frame = +1

Query: 172 LTSPALRSRPAPGTATFTQPKQQPKPVVHTQAAAGAGASATPAPQSSGGNSTFTQAVFNV 351
           +T P L    AP     T      KP      +   G S          +S+F QAV N 
Sbjct: 109 VTKPLLEDEEAPKHKLSTHSLLPSKPSSSMVVSHDMGIS---------NDSSFGQAVLNG 159

Query: 352 VNVMMGVGVLSLPFALKSSGWVGLLVLWVMGVATNYTAKALCECADA 492
           VNV+ GVG+LS P+A+K  GW+GL++L+  G+   YT   L  C D+
Sbjct: 160 VNVLCGVGILSTPYAVKEGGWLGLIILFAFGILCFYTGLLLRYCLDS 206

>ref|NP_850312.1| amino acid transporter family [Arabidopsis thaliana]
          Length = 550

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 41/58 (70%)
 Frame = +1

Query: 319 NSTFTQAVFNVVNVMMGVGVLSLPFALKSSGWVGLLVLWVMGVATNYTAKALCECADA 492
           NS++ QAV N +NV+ GVG+LS P+A K  GW+GL++L+V G+ + YT   L  C D+
Sbjct: 159 NSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDS 216

>gb|AAK92736.1| unknown protein [Arabidopsis thaliana]
          Length = 550

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 41/58 (70%)
 Frame = +1

Query: 319 NSTFTQAVFNVVNVMMGVGVLSLPFALKSSGWVGLLVLWVMGVATNYTAKALCECADA 492
           NS++ QAV N +NV+ GVG+LS P+A K  GW+GL++L+V G+ + YT   L  C D+
Sbjct: 159 NSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDS 216

>pir||T02589 hypothetical protein T16B24.23 - Arabidopsis thaliana  (fragment)
           gi|20197256|gb|AAM14997.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 381

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 41/58 (70%)
 Frame = +1

Query: 319 NSTFTQAVFNVVNVMMGVGVLSLPFALKSSGWVGLLVLWVMGVATNYTAKALCECADA 492
           NS++ QAV N +NV+ GVG+LS P+A K  GW+GL++L+V G+ + YT   L  C D+
Sbjct: 159 NSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDS 216

>pir||E84813 hypothetical protein At2g39130 [imported] - Arabidopsis thaliana
          Length = 529

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 41/58 (70%)
 Frame = +1

Query: 319 NSTFTQAVFNVVNVMMGVGVLSLPFALKSSGWVGLLVLWVMGVATNYTAKALCECADA 492
           NS++ QAV N +NV+ GVG+LS P+A K  GW+GL++L+V G+ + YT   L  C D+
Sbjct: 159 NSSYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDS 216



EST assemble image


clone accession position
1 HC027c06_r AV633945 1 480
2 HC017c01_r AV633138 8 493




Chlamydomonas reinhardtii
Kazusa DNA Research Institute