KCC001878A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001878A_C01 KCC001878A_c01
gagagagagaactagtctcgagttttttttttttttttttcaatcgctcacatttACATA
GCCAAGGCCAAGCACTCGTGGCGCATCACAAGCACAGTCAGTGTGTCCAACCAGCCGTCA
GAAGGTCGTCGCAGTCAGTATTGTCACACTAGTCCGAGTTCCGATTGGGGTCAGGTCATG
AGGCCTACAGGTTGAGGTCATTTGCCACCGGCCGATTCATTGCAGGCCAGGGCTCCTAAT
CCTAATGGCGACAATGCTGCGCCATCGATCCTATTACAGCTTGGGGGCGCGGGGCGCCCC
TTGGGGAAAGCGCACCCTATCTAGATCCCCGCCTGAGGGGGTGAATGCACCACACCAGGC
ATCGCACGCAGCAACGGTTTGCTCAGTGCTACCTCCAGGCACGGGCAGATACCGTTGGCC
GGCTGATACTACGCGGTGGTGTCCTGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001878A_C01 KCC001878A_c01
         (448 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q24546|SYN_DROME Synapsin gi|1419487|emb|CAA64723.1| homologo...    39  0.012
ref|NP_731459.1| Synapsin CG3985-PD [Drosophila melanogaster] gi...    39  0.012
ref|NP_788628.1| Synapsin CG3985-PF [Drosophila melanogaster] gi...    39  0.012
emb|CAA64722.1| homologous to synapsin I [Drosophila melanogaster]     39  0.012
ref|NP_536749.2| Synapsin CG3985-PB [Drosophila melanogaster] gi...    39  0.012

>sp|Q24546|SYN_DROME Synapsin gi|1419487|emb|CAA64723.1| homologous to synapsin I
           [Drosophila melanogaster]
          Length = 980

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 31/97 (31%), Positives = 42/97 (42%)
 Frame = +1

Query: 124 GRRSQYCHTSPSSDWGQVMRPTG*GHLPPADSLQARAPNPNGDNAAPSILLQLGGAGRPL 303
           GR    C  S        M  TG G LP   S+ +RA +P  +  AP+  L  G    P+
Sbjct: 390 GRMQNVCRPS--------MAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPM 441

Query: 304 GKAHPI*IPA*GGECTTPGIARSNGLLSATSRHGQIP 414
           G   PI       E T+P +  S G LS+ S   ++P
Sbjct: 442 GGPPPI------PERTSPAVG-SIGRLSSRSSISEVP 471

>ref|NP_731459.1| Synapsin CG3985-PD [Drosophila melanogaster]
           gi|23170892|gb|AAF54506.2| CG3985-PD [Drosophila
           melanogaster]
          Length = 443

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 31/97 (31%), Positives = 42/97 (42%)
 Frame = +1

Query: 124 GRRSQYCHTSPSSDWGQVMRPTG*GHLPPADSLQARAPNPNGDNAAPSILLQLGGAGRPL 303
           GR    C  S        M  TG G LP   S+ +RA +P  +  AP+  L  G    P+
Sbjct: 296 GRMQNVCRPS--------MAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPM 347

Query: 304 GKAHPI*IPA*GGECTTPGIARSNGLLSATSRHGQIP 414
           G   PI       E T+P +  S G LS+ S   ++P
Sbjct: 348 GGPPPI------PERTSPAVG-SIGRLSSRSSISEVP 377

>ref|NP_788628.1| Synapsin CG3985-PF [Drosophila melanogaster]
           gi|28381228|gb|AAO41538.1| CG3985-PF [Drosophila
           melanogaster]
          Length = 927

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 31/97 (31%), Positives = 42/97 (42%)
 Frame = +1

Query: 124 GRRSQYCHTSPSSDWGQVMRPTG*GHLPPADSLQARAPNPNGDNAAPSILLQLGGAGRPL 303
           GR    C  S        M  TG G LP   S+ +RA +P  +  AP+  L  G    P+
Sbjct: 390 GRMQNVCRPS--------MAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPM 441

Query: 304 GKAHPI*IPA*GGECTTPGIARSNGLLSATSRHGQIP 414
           G   PI       E T+P +  S G LS+ S   ++P
Sbjct: 442 GGPPPI------PERTSPAVG-SIGRLSSRSSISEVP 471

>emb|CAA64722.1| homologous to synapsin I [Drosophila melanogaster]
          Length = 537

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 31/97 (31%), Positives = 42/97 (42%)
 Frame = +1

Query: 124 GRRSQYCHTSPSSDWGQVMRPTG*GHLPPADSLQARAPNPNGDNAAPSILLQLGGAGRPL 303
           GR    C  S        M  TG G LP   S+ +RA +P  +  AP+  L  G    P+
Sbjct: 390 GRMQNVCRPS--------MAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPM 441

Query: 304 GKAHPI*IPA*GGECTTPGIARSNGLLSATSRHGQIP 414
           G   PI       E T+P +  S G LS+ S   ++P
Sbjct: 442 GGPPPI------PERTSPAVG-SIGRLSSRSSISEVP 471

>ref|NP_536749.2| Synapsin CG3985-PB [Drosophila melanogaster]
           gi|23170890|gb|AAN13462.1| CG3985-PB [Drosophila
           melanogaster]
          Length = 537

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 31/97 (31%), Positives = 42/97 (42%)
 Frame = +1

Query: 124 GRRSQYCHTSPSSDWGQVMRPTG*GHLPPADSLQARAPNPNGDNAAPSILLQLGGAGRPL 303
           GR    C  S        M  TG G LP   S+ +RA +P  +  AP+  L  G    P+
Sbjct: 390 GRMQNVCRPS--------MAQTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPM 441

Query: 304 GKAHPI*IPA*GGECTTPGIARSNGLLSATSRHGQIP 414
           G   PI       E T+P +  S G LS+ S   ++P
Sbjct: 442 GGPPPI------PERTSPAVG-SIGRLSSRSSISEVP 471



EST assemble image


clone accession position
1 LC035c06_r AV621383 1 448
2 HC016b05_r AV633055 56 385




Chlamydomonas reinhardtii
Kazusa DNA Research Institute