KCC001877A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC001877A_C01 KCC001877A_c01
AGCAAACCCTTGCTATAACGAGGTGAAGCATCCAAGTTTAATTGCCGCAAAGATGGCCGC
CCGCGCATTCTCCGGCCTCCAAAAGCAAGTGTTCAGCTTGTACCGAGCTTGTATGAGAGG
GGTCAGATCGAAGCCTGAAAGTGAGCGCGCAGACCTTCGCGAATACGTTCGCGCCGAATT
TAATAAGGGCAAATCGCTGTCGCCCAAGGACATCCAGCGCATTGAACACATGCTACGGCA
TGGCAAGAAGATGCTTGTAATGCTGATGGCACCTGGAGCCAGGATGTCGTGGAGCCGGCC
CAGCAACACCTGAGGGAGGTACCAAAAACATCTGGGCACATCCTACCCTTCACAGCGCTC
ATCATCACACTGAGGGCCATTCAGCGCCGGCCCCCTGCCCTCCAACTCCTGGTTGTTGCT
GCGGTTGCGCCCACGCATGCGCTCTGACCCTCAACACCTGGCGGCCAGTCTCCGCAGCAA
CCTCAGCGGCTTCCCACATGATGCAAGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001877A_C01 KCC001877A_c01
(508 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_327793.1| hypothetical protein [Neurospora crassa] gi|289... 69 3e-11
ref|NP_076888.1| Hypothetical ORF identified by homology. See F... 59 3e-08
ref|NP_565912.1| expressed protein [Arabidopsis thaliana] gi|173... 58 8e-08
ref|XP_238783.2| similar to [Ascaris lumbricoides mRNA sequence.... 51 7e-06
ref|NP_593460.1| hypothetical protein [Schizosaccharomyces pombe... 51 9e-06
>ref|XP_327793.1| hypothetical protein [Neurospora crassa] gi|28926855|gb|EAA35818.1|
hypothetical protein [Neurospora crassa]
Length = 877
Score = 69.3 bits (168), Expect = 3e-11
Identities = 38/98 (38%), Positives = 50/98 (50%)
Frame = +2
Query: 71 SGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHGKK 250
SGLQK+V LYR C+R R KPE+ RA + + R EF K + +D IE +LR G +
Sbjct: 5 SGLQKEVLRLYRKCLRECRKKPEATRAHFKAFARTEFEKNIKVDKRDFSAIEFLLRKGSR 64
Query: 251 MLVMLMAPGARMSWSRPSNT*GRYQKHLGTSYPSQRSS 364
L M +PG RP + TS PS+ S
Sbjct: 65 QLEMYASPGKGSPHRRPK---------INTSSPSRSPS 93
>ref|NP_076888.1| Hypothetical ORF identified by homology. See FEBS Letters [2000]
487:31-36.; Ydr379c-ap [Saccharomyces cerevisiae]
Length = 79
Score = 58.9 bits (141), Expect = 3e-08
Identities = 28/71 (39%), Positives = 40/71 (55%)
Frame = +2
Query: 62 RAFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRH 241
+ SGLQK+V LYRA +R +KP+ + + Y+ EF K ++L KD IEH+LR
Sbjct: 3 KRLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRV 62
Query: 242 GKKMLVMLMAP 274
G K + P
Sbjct: 63 GNKKIATFSHP 73
>ref|NP_565912.1| expressed protein [Arabidopsis thaliana] gi|17380728|gb|AAL36194.1|
unknown protein [Arabidopsis thaliana]
gi|20196975|gb|AAM14851.1| Expressed protein
[Arabidopsis thaliana] gi|20259013|gb|AAM14222.1|
unknown protein [Arabidopsis thaliana]
gi|21593894|gb|AAM65861.1| unknown [Arabidopsis
thaliana]
Length = 90
Score = 57.8 bits (138), Expect = 8e-08
Identities = 32/75 (42%), Positives = 43/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 53 MAARAFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEF-NKGKSLSPKDIQRIEH 229
M A SG+QKQV SLYR +R RS+P +R + V EF + K + K+ Q IE+
Sbjct: 1 MGASKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEY 60
Query: 230 MLRHGKKMLVMLMAP 274
+LR G K L L +P
Sbjct: 61 LLRLGTKQLDQLKSP 75
>ref|XP_238783.2| similar to [Ascaris lumbricoides mRNA sequence.], gene product
[Rattus norvegicus]
Length = 1157
Score = 51.2 bits (121), Expect = 7e-06
Identities = 29/65 (44%), Positives = 39/65 (59%)
Frame = +2
Query: 71 SGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHGKK 250
S LQ+QV SLYR +R R KP +E VRAEF + SL D+ RIE++ R G++
Sbjct: 1044 SRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHASLPRSDVLRIEYLYRRGRR 1098
Query: 251 MLVML 265
L +L
Sbjct: 1099 QLQLL 1103
>ref|NP_593460.1| hypothetical protein [Schizosaccharomyces pombe]
gi|11359141|pir||T50242 hypothetical protein SPAC664.12c
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6692019|emb|CAB65813.1| SPAC664.12c
[Schizosaccharomyces pombe]
Length = 79
Score = 50.8 bits (120), Expect = 9e-06
Identities = 23/62 (37%), Positives = 36/62 (57%)
Frame = +2
Query: 65 AFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHG 244
A SGLQ+QV YR C+ ++K + +V EF K +++S +D IEH+LR G
Sbjct: 2 ALSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQTISKRDFFYIEHLLRVG 61
Query: 245 KK 250
++
Sbjct: 62 QR 63
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
HC039f09_r |
AV634919 |
1 |
583 |
2 |
LC080d02_r |
AV624623 |
56 |
536 |
3 |
HC019b11_r |
AV633303 |
90 |
544 |
4 |
HC015e01_r |
AV633002 |
103 |
597 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute