KCC001877A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001877A_C01 KCC001877A_c01
AGCAAACCCTTGCTATAACGAGGTGAAGCATCCAAGTTTAATTGCCGCAAAGATGGCCGC
CCGCGCATTCTCCGGCCTCCAAAAGCAAGTGTTCAGCTTGTACCGAGCTTGTATGAGAGG
GGTCAGATCGAAGCCTGAAAGTGAGCGCGCAGACCTTCGCGAATACGTTCGCGCCGAATT
TAATAAGGGCAAATCGCTGTCGCCCAAGGACATCCAGCGCATTGAACACATGCTACGGCA
TGGCAAGAAGATGCTTGTAATGCTGATGGCACCTGGAGCCAGGATGTCGTGGAGCCGGCC
CAGCAACACCTGAGGGAGGTACCAAAAACATCTGGGCACATCCTACCCTTCACAGCGCTC
ATCATCACACTGAGGGCCATTCAGCGCCGGCCCCCTGCCCTCCAACTCCTGGTTGTTGCT
GCGGTTGCGCCCACGCATGCGCTCTGACCCTCAACACCTGGCGGCCAGTCTCCGCAGCAA
CCTCAGCGGCTTCCCACATGATGCAAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001877A_C01 KCC001877A_c01
         (508 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_327793.1| hypothetical protein [Neurospora crassa] gi|289...    69  3e-11
ref|NP_076888.1| Hypothetical ORF identified by homology.  See F...    59  3e-08
ref|NP_565912.1| expressed protein [Arabidopsis thaliana] gi|173...    58  8e-08
ref|XP_238783.2| similar to [Ascaris lumbricoides mRNA sequence....    51  7e-06
ref|NP_593460.1| hypothetical protein [Schizosaccharomyces pombe...    51  9e-06

>ref|XP_327793.1| hypothetical protein [Neurospora crassa] gi|28926855|gb|EAA35818.1|
           hypothetical protein [Neurospora crassa]
          Length = 877

 Score = 69.3 bits (168), Expect = 3e-11
 Identities = 38/98 (38%), Positives = 50/98 (50%)
 Frame = +2

Query: 71  SGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHGKK 250
           SGLQK+V  LYR C+R  R KPE+ RA  + + R EF K   +  +D   IE +LR G +
Sbjct: 5   SGLQKEVLRLYRKCLRECRKKPEATRAHFKAFARTEFEKNIKVDKRDFSAIEFLLRKGSR 64

Query: 251 MLVMLMAPGARMSWSRPSNT*GRYQKHLGTSYPSQRSS 364
            L M  +PG      RP          + TS PS+  S
Sbjct: 65  QLEMYASPGKGSPHRRPK---------INTSSPSRSPS 93

>ref|NP_076888.1| Hypothetical ORF identified by homology.  See FEBS Letters [2000]
           487:31-36.; Ydr379c-ap [Saccharomyces cerevisiae]
          Length = 79

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 28/71 (39%), Positives = 40/71 (55%)
 Frame = +2

Query: 62  RAFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRH 241
           +  SGLQK+V  LYRA +R   +KP+  + +   Y+  EF K ++L  KD   IEH+LR 
Sbjct: 3   KRLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRV 62

Query: 242 GKKMLVMLMAP 274
           G K +     P
Sbjct: 63  GNKKIATFSHP 73

>ref|NP_565912.1| expressed protein [Arabidopsis thaliana] gi|17380728|gb|AAL36194.1|
           unknown protein [Arabidopsis thaliana]
           gi|20196975|gb|AAM14851.1| Expressed protein
           [Arabidopsis thaliana] gi|20259013|gb|AAM14222.1|
           unknown protein [Arabidopsis thaliana]
           gi|21593894|gb|AAM65861.1| unknown [Arabidopsis
           thaliana]
          Length = 90

 Score = 57.8 bits (138), Expect = 8e-08
 Identities = 32/75 (42%), Positives = 43/75 (56%), Gaps = 1/75 (1%)
 Frame = +2

Query: 53  MAARAFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEF-NKGKSLSPKDIQRIEH 229
           M A   SG+QKQV SLYR  +R  RS+P  +R  +   V  EF +  K +  K+ Q IE+
Sbjct: 1   MGASKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEY 60

Query: 230 MLRHGKKMLVMLMAP 274
           +LR G K L  L +P
Sbjct: 61  LLRLGTKQLDQLKSP 75

>ref|XP_238783.2| similar to [Ascaris lumbricoides mRNA sequence.], gene product
            [Rattus norvegicus]
          Length = 1157

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 29/65 (44%), Positives = 39/65 (59%)
 Frame = +2

Query: 71   SGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHGKK 250
            S LQ+QV SLYR  +R  R KP +E       VRAEF +  SL   D+ RIE++ R G++
Sbjct: 1044 SRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHASLPRSDVLRIEYLYRRGRR 1098

Query: 251  MLVML 265
             L +L
Sbjct: 1099 QLQLL 1103

>ref|NP_593460.1| hypothetical protein [Schizosaccharomyces pombe]
           gi|11359141|pir||T50242 hypothetical protein SPAC664.12c
           [imported] - fission yeast  (Schizosaccharomyces pombe)
           gi|6692019|emb|CAB65813.1| SPAC664.12c
           [Schizosaccharomyces pombe]
          Length = 79

 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 23/62 (37%), Positives = 36/62 (57%)
 Frame = +2

Query: 65  AFSGLQKQVFSLYRACMRGVRSKPESERADLREYVRAEFNKGKSLSPKDIQRIEHMLRHG 244
           A SGLQ+QV   YR C+   ++K +        +V  EF K +++S +D   IEH+LR G
Sbjct: 2   ALSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQTISKRDFFYIEHLLRVG 61

Query: 245 KK 250
           ++
Sbjct: 62  QR 63



EST assemble image


clone accession position
1 HC039f09_r AV634919 1 583
2 LC080d02_r AV624623 56 536
3 HC019b11_r AV633303 90 544
4 HC015e01_r AV633002 103 597




Chlamydomonas reinhardtii
Kazusa DNA Research Institute