KCC001876A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001876A_C01 KCC001876A_c01
cttatgataaCATCCCCCGTGCCCGACGATAACCCTGGAAAGAGTCCTGGCAAGAGTCCA
GCTTCAACTTTTCGCTGTATCAATCATACAACGCAGCCAAAACTGGGTGCTCTCTTCTCA
AACAGTTAGGAGCTTATCTCAAGAGAAAGGGTCGTGGTGCAACAGAAGAGATCATTCGTC
CCGTTGTGCATAGTTGTGCGCTGCGCTTAGCCGGAAACCGGCTCTGATGGCGAGTGAACT
TAGTAGGCTTATTGAGGATGAGCTGAAGAACAAAGGGTTCTACGAAGGGGGCGGCCAAGC
CAAGCAGCCCGCCAGGCCGGCACCTGCTGAAGAGGAGCGGGAAGATGACGACCACACCGC
GCTCATGGGCGCGCTCCGTGTGGAGGCGCGTGTCAAAGAGCACCAGGCGCAAAAGAAGCT
GCTTACATTGAAGCGCAGCGTCTGCATCGGCGGCGGCGTGCTGGTGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001876A_C01 KCC001876A_c01
         (468 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG26883.1|AF293354_6 PKSA putative O-methyltransferase; PKSA...    33  2.1
gb|AAB26949.1| glycoprotein gX                                         33  2.1
dbj|BAB24477.1| unnamed protein product [Mus musculus]                 33  2.1
ref|XP_323117.1| hypothetical protein [Neurospora crassa] gi|169...    32  2.8
gb|AAO65800.1|AF440781_19 monensin polyketide synthase modules 7...    32  3.6

>gb|AAG26883.1|AF293354_6 PKSA putative O-methyltransferase; PKSA-ORF6 [Streptomyces
           collinus]
          Length = 320

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 22/65 (33%), Positives = 28/65 (42%), Gaps = 4/65 (6%)
 Frame = +1

Query: 283 RRGRPSQA----ARQAGTC*RGAGR*RPHRAHGRAPCGGACQRAPGAKEAAYIEAQRLHR 450
           RRG P++     AR       G G  RP  AHGR P G   +RA    +    E +RL  
Sbjct: 166 RRGEPARQVPGPARDXARPPPGGGERRPETAHGRRPRGPRARRARRRPDGRPGEGRRLRD 225

Query: 451 RRRAG 465
           +   G
Sbjct: 226 QEHPG 230

>gb|AAB26949.1| glycoprotein gX
          Length = 103

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 23/68 (33%), Positives = 30/68 (43%), Gaps = 6/68 (8%)
 Frame = -1

Query: 459 TPPPMQTLRFNVSSFFCAWCSLTRASTRS-APMSAVWSSSS-----RSSSAGAGLAGCLA 298
           TPPP +          C   S  R+++ S +P  + W+SSS     RSS  G G      
Sbjct: 18  TPPPPRRA--------CRATSAPRSTSASPSPAWSSWASSSCASIWRSSGPGPGTTATAT 69

Query: 297 WPPPS*NP 274
           WPPP   P
Sbjct: 70  WPPPDPAP 77

>dbj|BAB24477.1| unnamed protein product [Mus musculus]
          Length = 105

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
 Frame = -2

Query: 464 PARRRRCRRCASM*AASFA---PGAL*HAPPHGARP*ARCGRHLPAPLQQVP 318
           P RR RC  C S+  AS +   PGA  H PP G+   +    HL +P Q  P
Sbjct: 2   PGRRSRCWWCPSLSGASVSAPFPGAKVHPPP-GSHQHSTAQFHLASPCQPYP 52

>ref|XP_323117.1| hypothetical protein [Neurospora crassa]
           gi|16944575|emb|CAC18256.2| conserved hypothetical
           protein [Neurospora crassa] gi|28922746|gb|EAA31969.1|
           hypothetical protein [Neurospora crassa]
          Length = 406

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 24/76 (31%), Positives = 36/76 (46%)
 Frame = -1

Query: 450 PMQTLRFNVSSFFCAWCSLTRASTRSAPMSAVWSSSSRSSSAGAGLAGCLAWPPPS*NPL 271
           P + L F+ +  F         ST S+  ++  SSSS SSS G G      W   + NP 
Sbjct: 196 PQRLLHFHKADIFSPTSLDPILSTPSSSSTSSSSSSSSSSSTGTG-----EWDLLTSNPP 250

Query: 270 FFSSSSISLLSSLAIR 223
           + S S  +L +S ++R
Sbjct: 251 YISPSGFALSTSRSVR 266

>gb|AAO65800.1|AF440781_19 monensin polyketide synthase modules 7 and 8; MonAV [Streptomyces
            cinnamonensis]
          Length = 4106

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 24/82 (29%), Positives = 37/82 (44%)
 Frame = +2

Query: 206  LSRKPALMASELSRLIEDELKNKGFYEGGGQAKQPARPAPAEEEREDDDHTALMGALRVE 385
            L+ KPA     L R    +   +G   GGG+   PARPA A   R++ D  A +  L  E
Sbjct: 3879 LAHKPAPALPALLRAFAGDQGGQGGGRGGGRGGGPARPA-AATTRQNVDWAAKLSVLTAE 3937

Query: 386  ARVKEHQAQKKLLTLKRSVCIG 451
               ++H+    L+    +  +G
Sbjct: 3938 ---EQHRTLLDLVRTHAAAVLG 3956



EST assemble image


clone accession position
1 HC015d06_r AV632996 1 419
2 HC093a05_r AV638950 11 468




Chlamydomonas reinhardtii
Kazusa DNA Research Institute