KCC001875A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001875A_C01 KCC001875A_c01
ccagtgcactgttttaagtattagtAGGCTATACACATTACAGGCGCAAAGATAATCGTC
GAGGCGGCGTCCGATGAGCAGAGGTGCATCGGCACTGAGGGCGCTGGCACGTATTCCGGT
ATTCGCAAGTGGTTCAACGAGTACAAACACAAATCGGGTATCCTTAACTTCAGCTCCGCA
CGCGGCAAGATGTGTGGCAGACCGCACCGCGACACGCAGACCGCCCCCTTCATTCGTCGA
GCCCGCCGCCGGCAAACTCCGTTACTGATAGCTGCCCGTCGCATGCCGCTACCTTTGCGC
ACAACGGGTTGTCCTCACTTAGCAACCCCACCATCAGCATTCATGCAACGGTAAGCAGCG
CTTCATGCGCAGCACGCTGTGCTGCACGCCGAGCCAGCCATGTTCCCGAGACCATCACAG
CGTTGGGACCCATCCACCCAGACCACTGACTCCTTCATATGTCCACGAGCGTGCCGTGCG
CCGCTCACTTGCTTGCGGCATGCGACAGCAGGTAGGTGCGCAGCTTGTCGAGTGACCGGT
ACCTGTGGGAGATCGTGTTCTTCGTTGTCTTGTCCATCTCAGCATACGTGTCGGTGAAGC
CGTCGGGCAGGAAGACGGGGTcccagccgaagtcggtggggccgcgcgcctgcacaatgc
gcccctcagtccgccccacgaacacaatgggctccgtgtcc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001875A_C01 KCC001875A_c01
         (701 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T05241 hypothetical protein F18A5.110 - Arabidopsis thalian...    91  2e-17
ref|NP_567410.1| auxin-regulated protein [Arabidopsis thaliana] ...    91  2e-17
ref|NP_608890.1| CG8891-PA [Drosophila melanogaster] gi|7296918|...    89  5e-17
gb|AAK54301.1|AC034258_19 putative HAM1 protein [Oryza sativa (j...    86  4e-16
ref|XP_317079.1| ENSANGP00000019707 [Anopheles gambiae] gi|21300...    85  1e-15

>pir||T05241 hypothetical protein F18A5.110 - Arabidopsis thaliana
           gi|4455301|emb|CAB36836.1| putative protein [Arabidopsis
           thaliana] gi|7268076|emb|CAB78414.1| putative protein
           [Arabidopsis thaliana]
          Length = 231

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 39/61 (63%), Positives = 49/61 (79%)
 Frame = -2

Query: 694 EPIVFVGRTEGRIVQARGPTDFGWDPVFLPDGFTDTYAEMDKTTKNTISHRYRSLDKLRT 515
           EP+ F+G+T G+IV ARGPTDFGWDPVF PDG+  TYAEM K  KN ISHRY+SL  +++
Sbjct: 156 EPLTFLGKTPGKIVPARGPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKS 215

Query: 514 Y 512
           +
Sbjct: 216 H 216

>ref|NP_567410.1| auxin-regulated protein [Arabidopsis thaliana]
           gi|21617884|gb|AAM66934.1| putative HAM1 protein
           [Arabidopsis thaliana]
          Length = 206

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 39/61 (63%), Positives = 49/61 (79%)
 Frame = -2

Query: 694 EPIVFVGRTEGRIVQARGPTDFGWDPVFLPDGFTDTYAEMDKTTKNTISHRYRSLDKLRT 515
           EP+ F+G+T G+IV ARGPTDFGWDPVF PDG+  TYAEM K  KN ISHRY+SL  +++
Sbjct: 131 EPLTFLGKTPGKIVPARGPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKS 190

Query: 514 Y 512
           +
Sbjct: 191 H 191

>ref|NP_608890.1| CG8891-PA [Drosophila melanogaster] gi|7296918|gb|AAF52191.1|
           CG8891-PA [Drosophila melanogaster]
           gi|17946013|gb|AAL49050.1| RE51791p [Drosophila
           melanogaster]
          Length = 191

 Score = 89.4 bits (220), Expect = 5e-17
 Identities = 40/63 (63%), Positives = 48/63 (75%)
 Frame = -2

Query: 700 DTEPIVFVGRTEGRIVQARGPTDFGWDPVFLPDGFTDTYAEMDKTTKNTISHRYRSLDKL 521
           D EP++F G TEG IV+ RGP DFGWDPVF P G+  TYAE+ K+ KNTISHRYR+L  L
Sbjct: 120 DAEPLIFKGITEGVIVEPRGPRDFGWDPVFQPSGYDKTYAELPKSEKNTISHRYRALALL 179

Query: 520 RTY 512
           R +
Sbjct: 180 RQH 182

>gb|AAK54301.1|AC034258_19 putative HAM1 protein [Oryza sativa (japonica cultivar-group)]
           gi|31432469|gb|AAP54099.1| putative HAM-1-like protein
           [Oryza sativa (japonica cultivar-group)]
          Length = 191

 Score = 86.3 bits (212), Expect = 4e-16
 Identities = 38/55 (69%), Positives = 44/55 (79%)
 Frame = -2

Query: 694 EPIVFVGRTEGRIVQARGPTDFGWDPVFLPDGFTDTYAEMDKTTKNTISHRYRSL 530
           EP+ FVG+T G+IV ARGP DFGWDPVF PDGF  TYAEM K+ KN ISHR ++L
Sbjct: 117 EPMTFVGKTAGKIVPARGPADFGWDPVFQPDGFDQTYAEMPKSVKNQISHRGKAL 171

>ref|XP_317079.1| ENSANGP00000019707 [Anopheles gambiae] gi|21300186|gb|EAA12331.1|
           ENSANGP00000019707 [Anopheles gambiae str. PEST]
          Length = 193

 Score = 84.7 bits (208), Expect = 1e-15
 Identities = 40/60 (66%), Positives = 44/60 (72%)
 Frame = -2

Query: 700 DTEPIVFVGRTEGRIVQARGPTDFGWDPVFLPDGFTDTYAEMDKTTKNTISHRYRSLDKL 521
           D E I+F GRTEG IV  RGP DFGWDPVF P G+  TYAE+ K  KN ISHRYR+L KL
Sbjct: 125 DGEVILFQGRTEGDIVAPRGPRDFGWDPVFQPTGYDQTYAELPKPKKNEISHRYRALAKL 184



EST assemble image


clone accession position
1 HC077d11_r AV637783 1 391
2 LC098e04_r AV625832 26 410
3 HC015d05_r AV632995 220 701




Chlamydomonas reinhardtii
Kazusa DNA Research Institute