KCC001873A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001873A_C01 KCC001873A_c01
GCACTCAATTACGCACACGCCACTCGACGATAGCGTGTATCAGAGCAACTCCCGACATCT
CGCGGAGATTCTGTGCCAGAGCTCACTGCTATCCCACCGCTCCTTCTAGGACCTTCTTAC
GTAGGACAACCATGGCTTCGCTGGCCTCAATTTGCTCGTCGCGTACTCAGGGAGTCTCGA
CGCGAGCTCAGTCCCGGCAAGCTGTGGTGGCCTCTGCTGTGCGGCCTGTGGCCGTGTGGA
CCCGGCCCACCCCCGACCGTGACGCGGACTTCATCAAGCCCTCGTACATTCCCACGCCGA
TTCAGCCCTCCATCACGCCGGGGCGCCAGGACTCCCCCATTTACGCTCCGGTGACGCCAG
AGTTTCGTCCTGCTGAGCTACCGGAGACGCCCAAGGAGCTGCCCAACGCCCCCAGGCTGC
CGGAGCGGCGGCCGGATGACATCCCCGCGGGGAACCCCAAGGAGAAGCCCGGGCAGCAAG
GCACTCCCGAncagcgggaggcgccccgt


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001873A_C01 KCC001873A_c01
         (509 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200444.1| proline-rich protein family [Arabidopsis thalia...    48  6e-05
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         46  3e-04
ref|NP_501263.1| putative protein (4I491) [Caenorhabditis elegan...    45  7e-04
ref|ZP_00032031.1| COG3468: Type V secretory pathway, adhesin Ai...    44  0.001
ref|NP_638996.1| conserved hypothetical protein [Xanthomonas cam...    44  0.001

>ref|NP_200444.1| proline-rich protein family [Arabidopsis thaliana]
           gi|10177831|dbj|BAB11260.1| contains similarity to
           carbonic anhydrase~gene_id:MCD7.6 [Arabidopsis thaliana]
          Length = 350

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
 Frame = +3

Query: 204 VVASAVRPVAVWTRPTPDRDADFIKPSYIPTPIQPSITPGR---QDSPIYAPVTPEFRPA 374
           +V+SA  P     +P P       KP+  PTP +P   P     +  P  AP  P+ +PA
Sbjct: 19  IVSSAPAPKPPKPKPAPAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPA 78

Query: 375 ELPETPKELPN-APRLPERRPDDIPA-GNPKEKPGQQGTPXQREAP 506
             P  PK  P  AP  P  +P   P    PK  P    TP  +  P
Sbjct: 79  PAPTPPKPKPKPAPTPPNPKPTPAPTPPKPKPAPAPAPTPAPKPKP 124

 Score = 39.3 bits (90), Expect = 0.029
 Identities = 30/101 (29%), Positives = 38/101 (36%), Gaps = 7/101 (6%)
 Frame = +3

Query: 225 PVAVWTRPTPDRDADFIKPSYIPTPIQPS-------ITPGRQDSPIYAPVTPEFRPAELP 383
           P     +P P       KP   P P  P          P  + +P   P  P+ +PA  P
Sbjct: 35  PAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPTP 94

Query: 384 ETPKELPNAPRLPERRPDDIPAGNPKEKPGQQGTPXQREAP 506
             PK  P AP  P+ +P   PA  P  KP     P  + AP
Sbjct: 95  PNPKPTP-APTPPKPKPAPAPAPTPAPKP----KPAPKPAP 130

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 36/74 (48%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCPTPPGCRSG 429
           PP  + T + PR  P R +PP+   ARTPP     R        R  PR+ PT    R+ 
Sbjct: 166 PPRASPTRTPPRASPTR-TPPTESPARTPPTASPARTPSRASPRRMPPRASPTRTPPRAS 224

Query: 430 GRMTSPRGTPRRSP 471
              T PR +P+R+P
Sbjct: 225 PTRTPPRASPKRTP 238

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 29/82 (35%), Positives = 37/82 (44%), Gaps = 8/82 (9%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRF--------SPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCP 405
           PP  +   + PR  PRR         +PP+   ARTPP     R        R  PR+ P
Sbjct: 67  PPRASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRASPRRTPPRASP 126

Query: 406 TPPGCRSGGRMTSPRGTPRRSP 471
           T    R+  R T PR +PRR+P
Sbjct: 127 TRTPPRASPRRTPPRASPRRTP 148

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 30/76 (39%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCP--TPPGCR 423
           P T + T + P   P R +PP+   ARTPP     R        R  PR+ P  TPP  R
Sbjct: 4   PYTTSLTRTPPTASPAR-TPPTESPARTPPTASPARTPPRASPARTPPRASPGRTPP--R 60

Query: 424 SGGRMTSPRGTPRRSP 471
           +  R T PR +PRR+P
Sbjct: 61  ASPRRTPPRASPRRAP 76

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 26/74 (35%), Positives = 34/74 (45%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCPTPPGCRSG 429
           PPT +   +  R  PRR +PP     RTPP     R        R  PR+ PT    R+ 
Sbjct: 103 PPTASPARTPSRASPRR-TPPRASPTRTPPRASPRRTPPRASPRRTPPRASPTRAPPRAS 161

Query: 430 GRMTSPRGTPRRSP 471
            + T PR +P R+P
Sbjct: 162 PKRTPPRASPTRTP 175

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCP--TPPGCR 423
           PPT +   + P   P R +PP+   ARTPP     R        R  PR+ P  TPP  R
Sbjct: 13  PPTASPARTPPTESPAR-TPPTASPARTPPRASPARTPPRASPGRTPPRASPRRTPP--R 69

Query: 424 SGGRMTSPRGTPRRSP 471
           +  R   PR +PRR+P
Sbjct: 70  ASPRRAPPRASPRRTP 85

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 25/74 (33%), Positives = 32/74 (42%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCPTPPGCRSG 429
           PP  +   + PR  PRR +PP     RTPP     R        R  P + P     R+ 
Sbjct: 58  PPRASPRRTPPRASPRR-APPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRAS 116

Query: 430 GRMTSPRGTPRRSP 471
            R T PR +P R+P
Sbjct: 117 PRRTPPRASPTRTP 130

 Score = 39.7 bits (91), Expect = 0.022
 Identities = 30/80 (37%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCP--TPPGCR 423
           PP  + T + PR  PRR +PP     RTPP     R S      R  PR+ P  TPP  R
Sbjct: 121 PPRASPTRTPPRASPRR-TPPRASPRRTPP-----RAS----PTRAPPRASPKRTPP--R 168

Query: 424 SGGRMTSPRGTPRRSPGSKA 483
           +    T PR +P R+P +++
Sbjct: 169 ASPTRTPPRASPTRTPPTES 188

 Score = 37.7 bits (86), Expect = 0.084
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +1

Query: 250 PPTVTRTSSSPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCPTPPGCRSG 429
           PPT +   + P   P R +PP    ARTPP     R        R  PR+ P     R+ 
Sbjct: 22  PPTESPARTPPTASPAR-TPPRASPARTPPRASPGRTPPRASPRRTPPRASPRRAPPRAS 80

Query: 430 GRMTSPRGTPRRSPGSKA 483
            R T P  +P R+P +++
Sbjct: 81  PRRTPPTASPTRTPPTES 98

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 277 SPRTFPRRFSPPSRRGARTPPFTLR*RQSFVLLSYRRRPRSCP--TPPGCRSGGRMTSPR 450
           +P T     +PP+   ARTPP     R        R  PR+ P  TPP  R+    T PR
Sbjct: 3   TPYTTSLTRTPPTASPARTPPTESPARTPPTASPARTPPRASPARTPP--RASPGRTPPR 60

Query: 451 GTPRRSP 471
            +PRR+P
Sbjct: 61  ASPRRTP 67

>ref|NP_501263.1| putative protein (4I491) [Caenorhabditis elegans]
           gi|7497784|pir||T29293 hypothetical protein C50F7.5 -
           Caenorhabditis elegans gi|1118091|gb|AAA83301.1|
           Hypothetical protein C50F7.5 [Caenorhabditis elegans]
          Length = 309

 Score = 44.7 bits (104), Expect = 7e-04
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 246 PTPDRDADFIKPSYIPTP--IQPSITPGRQDSPIYAPVTPEFRPAELPETPKELPNAPRL 419
           P P   +D   PS  P+P  + PS  P   + P   PV P   P+  P  P   P  P  
Sbjct: 195 PGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPS--PSDPPGPPGPPGP 252

Query: 420 PERRPDDIPAGNPKEKPGQQGTPXQR 497
           P RRP   P    +  PG  G P +R
Sbjct: 253 PTRRPPGPPGPPTRRPPGPPGPPTRR 278

>ref|ZP_00032031.1| COG3468: Type V secretory pathway, adhesin AidA [Burkholderia
           fungorum]
          Length = 1049

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 28/76 (36%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
 Frame = +3

Query: 270 FIKPSYI-PTPIQPSI--TPGRQDSPIYAPVTPEFRPAELPETPKELPNAPRLPERRPDD 440
           F++ S++ P  I P++  +P    SP   P TP   P E P TP   P  P  P   P  
Sbjct: 582 FLRSSFVVPESITPTVPLSPATPSSPPGEPGTPSSPPGE-PGTPSSPPGQPGTPSSPPGQ 640

Query: 441 IPAGNPKEKPGQQGTP 488
              G P   PGQ GTP
Sbjct: 641 --PGTPSSPPGQPGTP 654

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 31/95 (32%), Positives = 35/95 (36%)
 Frame = +3

Query: 204 VVASAVRPVAVWTRPTPDRDADFIKPSYIPTPIQPSITPGRQDSPIYAPVTPEFRPAELP 383
           VV  ++ P    +  TP        P    TP  P   PG   SP   P TP   P + P
Sbjct: 588 VVPESITPTVPLSPATPSSP-----PGEPGTPSSPPGEPGTPSSPPGQPGTPSSPPGQ-P 641

Query: 384 ETPKELPNAPRLPERRPDDIPAGNPKEKPGQQGTP 488
            TP   P  P  P   P     G P   PGQ G P
Sbjct: 642 GTPSSPPGQPGTPSSPPGQ--PGTPSSPPGQPGAP 674

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 26/65 (40%), Positives = 27/65 (41%)
 Frame = +3

Query: 294 TPIQPSITPGRQDSPIYAPVTPEFRPAELPETPKELPNAPRLPERRPDDIPAGNPKEKPG 473
           TP  P   PG   SP   P TP   P + P TP   P  P  P   P     G P   PG
Sbjct: 603 TPSSPPGEPGTPSSPPGEPGTPSSPPGQ-PGTPSSPPGQPGTPSSPPGQ--PGTPSSPPG 659

Query: 474 QQGTP 488
           Q GTP
Sbjct: 660 QPGTP 664

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 23/69 (33%), Positives = 26/69 (37%)
 Frame = +3

Query: 279 PSYIPTPIQPSITPGRQDSPIYAPVTPEFRPAELPETPKELPNAPRLPERRPDDIPAGNP 458
           P    TP  P   PG   SP   P TP   P + P TP   P  P  P   P      + 
Sbjct: 628 PGQPGTPSSPPGQPGTPSSPPGQPGTPSSPPGQ-PGTPSSPPGQPGAPSSPPGQPETPSS 686

Query: 459 KEKPGQQGT 485
             +PG Q T
Sbjct: 687 PGQPGGQTT 695

>ref|NP_638996.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913] gi|21114932|gb|AAM42920.1|
           conserved hypothetical protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 226

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = +3

Query: 114 FLRRTTMASLASICSSRTQGVSTRAQSRQAVVASAVRPVA---VWTRPTPDRDADFIKPS 284
           + RR   A L +  S       T + S + +V   +   A   +    T  R ++ ++P 
Sbjct: 64  YCRRVPAAPLIAYLSCNVVPDMTISSSTRGLVLCGLLAAAGTVLAQSATTTRSSNTLQPI 123

Query: 285 YIPTPIQPSITPGRQDSPIYAPVTPEFRPAELPETPKELPNAPRLPERRPDDIP 446
             PTP+QP++ P R   P     TP   P  +P    + PNAP +P R P   P
Sbjct: 124 TTPTPVQPTVAPPRPVQP-----TPTMTP--VPSQLGQRPNAPTIPTRGPAQTP 170



EST assemble image


clone accession position
1 HC014c06_r AV632912 1 592
2 HC057b10_r AV636262 2 542
3 HC028c04_r AV634023 100 613
4 HC031e02_r AV634287 108 558
5 HC083d07_r AV638217 108 264




Chlamydomonas reinhardtii
Kazusa DNA Research Institute