KCC001866A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001866A_C01 KCC001866A_c01
atcacaccagttgtcaccaagcttagaaCCCGTCGTCAAGTACCGTATCAGCAAGTGCAA
GTGCAACAAATATGCAGCTAGCGAACCTTAACGCGAACGCCTCTCGCTGCCAGCGGGATG
GATCATCGAAGCCTTCTCATCGCCATGTAGTGGTTTCCGCACAACGGTTGGCTCAGCGCA
CAGGCGCGGAAGGTTCTGTCGCGCAACATGCCAGTCGTCGCGTTTTCGGCGCCTCGCTGC
TTGGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGGTTCAAGA
AGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCAGCTGCCTGCAAACGGGC
TACGTGTGTACGACCTGGAGGAGGGCAGTGGGGCGGAGATTAAGGCAGGCGACAAAATTG
TGGTGCACTACGACTGCCTCTACCGCGGTCTGGATGTCGTGTCAAGCCGCTCAGCTCGCC
TTCTGGGAGGCAACCGCACCATTGCGGAGCCGTACGAGTACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001866A_C01 KCC001866A_c01
         (522 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173504.1| immunophilin / FKBP-type peptidyl-prolyl cis-tr...    76  3e-13
pir||E86340 protein F2D10.32 [imported] - Arabidopsis thaliana g...    71  7e-12
ref|NP_187617.1| immunophilin / FKBP-type peptidyl-prolyl cis-tr...    64  1e-09
dbj|BAC83911.1| immunophilin / FKBP-type peptidyl-prolyl cis-tra...    46  3e-04
gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]         42  0.005

>ref|NP_173504.1| immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase
           [Arabidopsis thaliana] gi|18203241|sp|Q9LM71|FKB1_ARATH
           Probable FKBP-type peptidyl-prolyl cis-trans isomerase
           1, chloroplast precursor (Ppiase) (Rotamase)
           gi|26449905|dbj|BAC42074.1| unknown protein [Arabidopsis
           thaliana] gi|28827556|gb|AAO50622.1| putative FKBP-type
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
          Length = 232

 Score = 75.9 bits (185), Expect = 3e-13
 Identities = 39/103 (37%), Positives = 58/103 (55%)
 Frame = +3

Query: 213 SRRVFGASLLGAIAAVSMIPAGEAQAGFKKELKKRKIPEEDYVQLPANGLRVYDLEEGSG 392
           SRR     LL +I   S      + +  ++   ++ IP E+Y   P  GL+ YD+EEG G
Sbjct: 44  SRRDASIILLSSIPLTSFFVLTPSSSEARERRSRKVIPLEEYSTGP-EGLKFYDIEEGKG 102

Query: 393 AEIKAGDKIVVHYDCLYRGLDVVSSRSARLLGGNRTIAEPYEY 521
                G    VH+DC YR +  +S+R ++LL GNR+IA+PYE+
Sbjct: 103 PVATEGSTAQVHFDCRYRSITAISTRESKLLAGNRSIAQPYEF 145

>pir||E86340 protein F2D10.32 [imported] - Arabidopsis thaliana
           gi|8886936|gb|AAF80622.1|AC069251_15 F2D10.32
           [Arabidopsis thaliana]
          Length = 233

 Score = 71.2 bits (173), Expect = 7e-12
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = +3

Query: 213 SRRVFGASLLGAIAAVSMIPAGEAQAGFKKELKKRKIPEEDYVQLPANGLRVYDLEEGSG 392
           SRR     LL +I   S      + +  ++   ++ IP E+Y   P  GL+ YD+EEG G
Sbjct: 44  SRRDASIILLSSIPLTSFFVLTPSSSEARERRSRKVIPLEEYSTGP-EGLKFYDIEEGKG 102

Query: 393 AEIKAGDKIVVHYDCLYRGLDVVSSRSARLLGGNRTIA-EPYEY 521
                G    VH+DC YR +  +S+R ++LL GNR+IA +PYE+
Sbjct: 103 PVATEGSTAQVHFDCRYRSITAISTRESKLLAGNRSIAQQPYEF 146

>ref|NP_187617.1| immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase,
           putative [Arabidopsis thaliana]
           gi|6143884|gb|AAF04431.1|AC010927_24 unknown protein
           [Arabidopsis thaliana] gi|20453145|gb|AAM19814.1|
           AT3g10060/T22K18_11 [Arabidopsis thaliana]
           gi|21689613|gb|AAM67428.1| AT3g10060/T22K18_11
           [Arabidopsis thaliana]
          Length = 230

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 32/92 (34%), Positives = 53/92 (56%)
 Frame = +3

Query: 216 RRVFGASLLGAIAAVSMIPAGEAQAGFKKELKKRKIPEEDYVQLPANGLRVYDLEEGSGA 395
           RRV    LL   + +    + EA +  ++ L+  K+PE D+  LP NGL+ YD++ G+GA
Sbjct: 60  RRVLLGCLLATASGILSTGSAEAVSTSRRALRASKLPESDFTTLP-NGLKYYDIKVGNGA 118

Query: 396 EIKAGDKIVVHYDCLYRGLDVVSSRSARLLGG 491
           E   G ++ VHY   ++G+  ++SR    +GG
Sbjct: 119 EAVKGSRVAVHYVAKWKGITFMTSRQGLGVGG 150

>dbj|BAC83911.1| immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase-like
           [Oryza sativa (japonica cultivar-group)]
          Length = 236

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 33/140 (23%)
 Frame = +3

Query: 171 AQRTGAEGSVAQHASRRVFGASLLGAIAAVSMI--PAGEAQA--GFKKELKKRKIPEEDY 338
           A R  + G+     +RR + ASLL A AA   I    G+A A    ++ L+  KIPE ++
Sbjct: 29  ACRCCSGGASHDGTTRRRWLASLLAATAAAVGIGVAGGDADAVSTSRRALRSAKIPESEF 88

Query: 339 VQLPANGL-----------------------------RVYDLEEGSGAEIKAGDKIVVHY 431
             LP NGL                             R YD+  GSG +   G ++ VHY
Sbjct: 89  TTLP-NGLKFCYRVTGRQTILCYFPFSECRVTSEALSRYYDITVGSGLKAVKGSRVAVHY 147

Query: 432 DCLYRGLDVVSSRSARLLGG 491
              ++G+  ++SR    +GG
Sbjct: 148 VAKWKGITFMTSRQGLGVGG 167

>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 35/93 (37%), Positives = 43/93 (45%), Gaps = 12/93 (12%)
 Frame = -1

Query: 459 RHPDRGRGSRSAPQF-CRLP*SPPHC-----PPPGRTHV------ARLQAAARSPPRGSC 316
           R P RGRG   AP+   RLP +PP       PPPGR  V      ARL+ A R PPRG+ 
Sbjct: 353 RGPPRGRGG--APRGPARLPRAPPPAARPGPPPPGRALVRARAPAARLRGARRGPPRGA- 409

Query: 315 VSSVPS*TLLALLQRESSTPPQWPQAARRRKRD 217
                       L+R     P+ P+  R  +RD
Sbjct: 410 ------------LRRRPRARPRVPRVLRAPRRD 430



EST assemble image


clone accession position
1 MX060g12_r BP088453 1 348
2 HC012e03_r AV632779 29 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute