KCC001863A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001863A_C01 KCC001863A_c01
TAAATATCCTTATAGAACACCACCTCCTTACTGGCCAAGCGCACCAGCTGCAGAGATTCC
TGCACAATAAACCCGAGACCCTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGATGG
GAGTGGTCCACGCCTTGTTTATCTGCTGCAATGCGAAGCCACGTTTCGTTTTCTGCAAGG
GTGTCTGCAGCGTCCTGGCTGTTGAGAGCATACGAACAGGTTGGCGTGTGGAGGCACCCA
GGTTTGCGGTTGGCAGACATTTCCACTGGCCGCATACGCGGGCGCTGCAACACTTGTTTG
AGAGGCTTGAGATGGCTTGCTGCCATTGCCCCTAAACCATACGTAGGGCGCACGCCGTGC
TGTGCACGGGTCCAGGAGCTGGCGGTTTGCGGGCGACCGCTCGACCGGCGGCGCCTGCAG
CTGTGGGGGGCACCGCACACCAGTCTGGTTGGAGGTGCATCGTTGTGCGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001863A_C01 KCC001863A_c01
         (472 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH51611.1| Unknown (protein for MGC:56492) [Danio rerio]           35  3e-04
ref|XP_340562.1| hypothetical protein Tb927.2.4630 [Trypanosoma ...    34  0.006
ref|NP_608806.2| CG31772-PA [Drosophila melanogaster] gi|2294525...    39  0.023
dbj|BAA91361.1| unnamed protein product [Homo sapiens] gi|126529...    39  0.023
ref|XP_286272.1| hypothetical protein XP_286272 [Mus musculus]         39  0.030

>gb|AAH51611.1| Unknown (protein for MGC:56492) [Danio rerio]
          Length = 561

 Score = 35.0 bits (79), Expect(2) = 3e-04
 Identities = 14/23 (60%), Positives = 15/23 (64%)
 Frame = +2

Query: 44  PAAEIPAQ*TRDPGCVCVCVCVC 112
           PA   P   TR+  CVCVCVCVC
Sbjct: 482 PALHTPVMLTRECVCVCVCVCVC 504

 Score = 31.2 bits (69), Expect = 6.3
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 76  RPWLCVCVCVCVC*WEWSTPC-LSAAMRSHVSFSARVSAASWLLR 207
           R  +CVCVCVCVC       C  +A M   V    R S +S  LR
Sbjct: 492 RECVCVCVCVCVCVCVCVLNCAFAAVMLKCVCVDQRRSVSSGCLR 536

 Score = 30.8 bits (68), Expect = 8.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 75  ETLVVCVCVCVCVLMGVVHALF 140
           E + VCVCVCVCV + V++  F
Sbjct: 493 ECVCVCVCVCVCVCVCVLNCAF 514

 Score = 29.6 bits (65), Expect(2) = 3e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 87  VCVCVCVCVLMGVVHALFICC 149
           VCVCVCVCVL     A+ + C
Sbjct: 501 VCVCVCVCVLNCAFAAVMLKC 521

>ref|XP_340562.1| hypothetical protein Tb927.2.4630 [Trypanosoma brucei]
           gi|33348596|gb|AAQ15921.1| hypothetical protein
           Tb927.2.4630 [Trypanosoma brucei]
          Length = 88

 Score = 33.9 bits (76), Expect(2) = 0.006
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 48  LQRFLHNKPETLVVCVCVCVCV 113
           L  ++HN    L+VCVCVCVCV
Sbjct: 26  LSFYIHNMLVCLIVCVCVCVCV 47

 Score = 26.9 bits (58), Expect(2) = 0.006
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 89  VCVCVCVCADGSGPRLVYLL 148
           VCVCVCVC   S P   + L
Sbjct: 39  VCVCVCVCVSLSRPSFSFPL 58

>ref|NP_608806.2| CG31772-PA [Drosophila melanogaster] gi|22945253|gb|AAF51066.3|
           CG31772-PA [Drosophila melanogaster]
          Length = 1802

 Score = 39.3 bits (90), Expect = 0.023
 Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
 Frame = -3

Query: 407 RSSGRPQTASSWTRAQHGVRPTYGLGAMAASHLKPLKQVLQRP-RMRPVEMSANRKPGCL 231
           RSSGR +TA S  R   G +P    G+M  + L+P  QV Q+P +M+P + S   K    
Sbjct: 41  RSSGRLKTARSQERLIGGKKPIIATGSMYET-LQPPLQVQQQPQQMQPQQSSTLPK---- 95

Query: 230 HTPTCSYALNSQDAADTLAENETWLRIAADKQGVDHSHQHTHTHTHTHNQGLGFIVQESL 51
                                 TWL      Q   H H   H H    +  +G I+ + L
Sbjct: 96  ----------------------TWLPPPVQLQPCQHHHAPIHLHQPISDNMVGLIIPQPL 133

Query: 50  QL-VRLASKEVV 18
            L + L S EV+
Sbjct: 134 PLALPLPSPEVL 145

>dbj|BAA91361.1| unnamed protein product [Homo sapiens] gi|12652975|gb|AAH00248.1|
           MGC25062 protein [Homo sapiens]
          Length = 147

 Score = 39.3 bits (90), Expect = 0.023
 Identities = 21/35 (60%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 189 CRHPCRKRNVASHCSR*TRRGPLPS-AHTHTHTHT 88
           CR PCR       C R  RRGPL   AHTHTHTHT
Sbjct: 64  CRGPCRPL-----CLRGRRRGPLGKCAHTHTHTHT 93

>ref|XP_286272.1| hypothetical protein XP_286272 [Mus musculus]
          Length = 92

 Score = 38.9 bits (89), Expect = 0.030
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -3

Query: 125 HSHQHTHTHTHTHNQGLG 72
           H H HTHTHTHTH  G+G
Sbjct: 46  HKHTHTHTHTHTHTHGMG 63

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 13/21 (61%), Positives = 15/21 (70%)
 Frame = -3

Query: 134 GVDHSHQHTHTHTHTHNQGLG 72
           G  H+H+HTHTHTHTH    G
Sbjct: 41  GTTHTHKHTHTHTHTHTHTHG 61



EST assemble image


clone accession position
1 HC012b01_r AV632748 1 472
2 HC012h01_r AV632807 1 439




Chlamydomonas reinhardtii
Kazusa DNA Research Institute