KCC001861A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001861A_C01 KCC001861A_c01
tGCGGCCTGTGTCCGCGCTTTCGCCTAACGTCTTTACTTCTAGTTCTAGGTCACCACACG
ATGGCCACTGCGGAGTTCACTGCCGAGGAGCTGGCTCTTGCCCAGCCGGAGAAGCCGGAG
GACGCGACGATCGAGGCCTGGTACATGGACGACAGCGACGAGGACCAGCGGCTGCCGCAC
AAGCTGAGCCCCAACCAGCCCTGCCCGCTGTCTGCCCTGCGCGATCTGGGTGTGCTGTAC
TGGAAGCTGGATGCTGACAAGCACGAGACAGACCCGCGCCTGGCGGCCATCCGCAAGGTT
TACAACTACAGCTACACGGAGATTGTGAACATCAGCAAGGACACGCTGCCGGACTACGAG
GCCAAGATCAAGTCCTTCTACCTGGAGCACATCCACTCGGACGACGAAATCCGGTACATC
CTGGACGGCTCGGGCTACTTCGACGTGCGGGACCACTCGGACCGCTGGATCCGCATCGCC
ACCCGCAAGGGCGATCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001861A_C01 KCC001861A_c01
         (497 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_216669.2| similar to expressed sequence AL024210 [Rattus ...   173  9e-43
ref|NP_598813.1| expressed sequence AL024210 [Mus musculus] gi|1...   173  1e-42
gb|AAQ24524.1| ARD-like protein [Rattus norvegicus]                   172  2e-42
gb|AAP97173.1|AF087863_1 submergence induced protein 2 [Homo sap...   169  1e-41
gb|AAH01467.1| SIPL protein [Homo sapiens]                            169  1e-41

>ref|XP_216669.2| similar to expressed sequence AL024210 [Rattus norvegicus]
          Length = 232

 Score =  173 bits (439), Expect = 9e-43
 Identities = 77/124 (62%), Positives = 96/124 (77%)
 Frame = +1

Query: 124 ATIEAWYMDDSDEDQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVY 303
           A ++AWYMD+S  D R+PH+  P++P  L  LR LGVLYWKLDADK+E DP L  IRK  
Sbjct: 53  AMVQAWYMDESTADPRMPHRAQPDRPVGLEQLRTLGVLYWKLDADKYENDPELEQIRKTR 112

Query: 304 NYSYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIAT 483
           NYS+ +I+ I KD+LP+YE KIK F+ EH+H D+EIRYIL+GSGYFDVRD  D+WIRI+ 
Sbjct: 113 NYSWMDIITICKDSLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISM 172

Query: 484 RKGD 495
            KGD
Sbjct: 173 EKGD 176

>ref|NP_598813.1| expressed sequence AL024210 [Mus musculus]
           gi|13543034|gb|AAH05695.1| Expressed sequence AL024210
           [Mus musculus]
          Length = 179

 Score =  173 bits (438), Expect = 1e-42
 Identities = 77/122 (63%), Positives = 95/122 (77%)
 Frame = +1

Query: 130 IEAWYMDDSDEDQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNY 309
           ++AWYMD+S  D R PH+  P++P  L  LR LGVLYWKLDADK+E DP L  IRK+ NY
Sbjct: 2   VQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNY 61

Query: 310 SYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRK 489
           S+ +I+ I KDTLP+YE KIK F+ EH+H D+EIRYIL+GSGYFDVRD  D+WIRI+  K
Sbjct: 62  SWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEK 121

Query: 490 GD 495
           GD
Sbjct: 122 GD 123

>gb|AAQ24524.1| ARD-like protein [Rattus norvegicus]
          Length = 179

 Score =  172 bits (436), Expect = 2e-42
 Identities = 76/122 (62%), Positives = 95/122 (77%)
 Frame = +1

Query: 130 IEAWYMDDSDEDQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNY 309
           ++AWYMD+S  D R+PH+  P++P  L  LR LGVLYWKLDADK+E DP L  IRK  NY
Sbjct: 2   VQAWYMDESTADPRMPHRAQPDRPVGLEQLRTLGVLYWKLDADKYENDPELEQIRKTRNY 61

Query: 310 SYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRK 489
           S+ +I+ I KD+LP+YE KIK F+ EH+H D+EIRYIL+GSGYFDVRD  D+WIRI+  K
Sbjct: 62  SWMDIITICKDSLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEK 121

Query: 490 GD 495
           GD
Sbjct: 122 GD 123

>gb|AAP97173.1|AF087863_1 submergence induced protein 2 [Homo sapiens]
          Length = 179

 Score =  169 bits (429), Expect = 1e-41
 Identities = 78/122 (63%), Positives = 91/122 (73%)
 Frame = +1

Query: 130 IEAWYMDDSDEDQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNY 309
           ++AWYMDD+  D R PH+  P +P  L  LR LGVLYWKLDADK+E DP L  IR+  NY
Sbjct: 2   VQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNY 61

Query: 310 SYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRK 489
           S+ +I+ I KD LP+YE KIK FY EH+H DDEIRYILDGSGYFDVRD  D+WIRI   K
Sbjct: 62  SWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEK 121

Query: 490 GD 495
           GD
Sbjct: 122 GD 123

>gb|AAH01467.1| SIPL protein [Homo sapiens]
          Length = 179

 Score =  169 bits (429), Expect = 1e-41
 Identities = 78/122 (63%), Positives = 91/122 (73%)
 Frame = +1

Query: 130 IEAWYMDDSDEDQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNY 309
           ++AWYMDD+  D R PH+  P +P  L  LR LGVLYWKLDADK+E DP L  IR+  NY
Sbjct: 2   VQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNY 61

Query: 310 SYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRK 489
           S+ +I+ I KD LP+YE KIK FY EH+H DDEIRYILDGSGYFDVRD  D+WIRI   K
Sbjct: 62  SWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEK 121

Query: 490 GD 495
           GD
Sbjct: 122 GD 123



EST assemble image


clone accession position
1 MX044g06_r BP087844 1 351
2 HC011h11_r AV632734 2 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute