KCC001856A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001856A_C01 KCC001856A_c01
gtcaaccaggcacaggtgcctagccagcagcacggccccgcaccggaatgggaggcggaa
tggcacgaccactgcaacacCCTCCCCTCCTGCAGTCCCTCCCAACGCCCAACACCAGCC
AGGCCTTACGTCACCCATAATAATAACTCCCACTTGCTTTTCCTACATACAACAAAATGG
TCGGCTTTGAGACCCGCGATGGCTTCGCCATCCCCACCGGAAACGCGAAGCAGTCCGATA
GCCTGAAGCCGGAGAACTTCAAGTTCTGGAGCGCTCGCGCCGCGCCGATGACTCCTTTCG
CCAGCCTCAGCGCGAGCATTTTGGGTGGACTCGGCAAGCCGGGAAGCGCAGGAGGTCGCG
TGGAGCCCGCGACCGGCTACGAGTTCCCTGCGGAGCTTTGCTACCTGAAGAAGCCTTGCC
CTAGCCTGGCGGGCCTAGGGGTGCGCAACAAGAAAATTGTCATCAAGGACATCCACGTTT
ACGCTCTGGGCATCTACGTGGATGCCGCCGCCGCCAAGTCCGCCCTGTCCGGCTTCAAGA
AGAAGACGGCGGCGGAGCTAGAGGCGGACCAGAGCTTCTACGATGCCGTGGTGTCCACGC
CGTCTGTGGAGAAGTCGCTGCGCCTGGTCATCAGCTCGCGACTGGTGGACCGCAAGAAGT
TCCTGGACGCTCTGGAGGACCGCCTGGCGCCCCGCCTCAAGCAGGCCGGCGAGCCCAGCA
CGCTGGACAACTTCCGAGCCCAGTTCGACTCGGTGCACTTCGAGAAGGGTCTGGAAATCG
CGTTCACGTGCGTGGACAACAAGAAGCTGGTGACCAAGGTGGCGGGCCAGGAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001856A_C01 KCC001856A_c01
         (834 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM61303.1| chalcone isomerase, putative [Arabidopsis thaliana]     74  3e-12
ref|NP_175757.1| chalcone-flavanone isomerase-related [Arabidops...    72  1e-11
gb|AAF78437.1|AC018748_16 Contains a weak similarity to chalcone...    72  1e-11
ref|NP_567140.1| expressed protein [Arabidopsis thaliana] gi|112...    55  1e-06
sp|P03181|YHL1_EBV HYPOTHETICAL BHLF1 PROTEIN gi|73912|pir||QQBE...    55  1e-06

>gb|AAM61303.1| chalcone isomerase, putative [Arabidopsis thaliana]
          Length = 287

 Score = 73.9 bits (180), Expect = 3e-12
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
 Frame = +3

Query: 363 EPATGYEFPAELCYLKKPCP-SLAGLGVRNKKIVIKDIHVYALGIYVDAAAAKSALSGFK 539
           E AT  +F   +       P SL G G R KK  I  + VYA G YV+ +   S LS +K
Sbjct: 86  ETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESIL-SGLSAWK 144

Query: 540 KKTAAELEADQSFYDAVVSTPSVEKSLRLVISSRLVDRKKFLDALEDRLAPRLKQAGEPS 719
            ++A E++ D S + ++      EKSL++V+  R VD K F DAL++ ++PR+K      
Sbjct: 145 GRSADEIQRDSSLFVSIFQA-QAEKSLQIVL-VRDVDGKTFWDALDEAISPRIKSPSSED 202

Query: 720 T--LDNFRAQFDSVHFEKGLEIAFTCVDNKKLVTKVA 824
           T  L  FR  F +    KG  I  T ++   ++  V+
Sbjct: 203 TTALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVS 239

>ref|NP_175757.1| chalcone-flavanone isomerase-related [Arabidopsis thaliana]
           gi|25405644|pir||D96575 probable chalcone isomerase,
           94270-95700 [imported] - Arabidopsis thaliana
           gi|12324026|gb|AAG51975.1|AC024260_13 chalcone
           isomerase, putative; 94270-95700 [Arabidopsis thaliana]
          Length = 287

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
 Frame = +3

Query: 363 EPATGYEFPAELCYLKKPCP-SLAGLGVRNKKIVIKDIHVYALGIYVDAAAAKSALSGFK 539
           E AT  +F   +       P SL G G R KK  I  + VYA G YV+ +   S LS + 
Sbjct: 86  ETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESIL-SGLSAWT 144

Query: 540 KKTAAELEADQSFYDAVVSTPSVEKSLRLVISSRLVDRKKFLDALEDRLAPRLKQAGEPS 719
            ++A E++ D S + ++      EKSL++V+  R VD K F DAL++ ++PR+K      
Sbjct: 145 GRSADEIQRDSSLFVSIFQA-QAEKSLQIVL-VRDVDGKTFWDALDEAISPRIKSPSSED 202

Query: 720 T--LDNFRAQFDSVHFEKGLEIAFTCVDNKKLVTKVA 824
           T  L  FR  F +    KG  I  T ++   ++  V+
Sbjct: 203 TTALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVS 239

>gb|AAF78437.1|AC018748_16 Contains a weak similarity to chalcone--flavonone isomerase from
           Pueraria lobata gi|Q43056 and containes fanconi anaemia
           group C protein PF|02106 domain. [Arabidopsis thaliana]
          Length = 271

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
 Frame = +3

Query: 363 EPATGYEFPAELCYLKKPCP-SLAGLGVRNKKIVIKDIHVYALGIYVDAAAAKSALSGFK 539
           E AT  +F   +       P SL G G R KK  I  + VYA G YV+ +   S LS + 
Sbjct: 86  ETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESIL-SGLSAWT 144

Query: 540 KKTAAELEADQSFYDAVVSTPSVEKSLRLVISSRLVDRKKFLDALEDRLAPRLKQAGEPS 719
            ++A E++ D S + ++      EKSL++V+  R VD K F DAL++ ++PR+K      
Sbjct: 145 GRSADEIQRDSSLFVSIFQA-QAEKSLQIVL-VRDVDGKTFWDALDEAISPRIKSPSSED 202

Query: 720 T--LDNFRAQFDSVHFEKGLEIAFTCVDNKKLVTKVA 824
           T  L  FR  F +    KG  I  T ++   ++  V+
Sbjct: 203 TTALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVS 239

>ref|NP_567140.1| expressed protein [Arabidopsis thaliana] gi|11283433|pir||T48106
           hypothetical protein F16M2.20 - Arabidopsis thaliana
           gi|7523399|emb|CAB86418.1| hypothetical protein
           [Arabidopsis thaliana] gi|17473780|gb|AAL38325.1|
           unknown protein [Arabidopsis thaliana]
           gi|20148595|gb|AAM10188.1| unknown protein [Arabidopsis
           thaliana] gi|21593803|gb|AAM65770.1| unknown
           [Arabidopsis thaliana]
          Length = 279

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
 Frame = +3

Query: 360 VEPATGYEFPAELCYLKKPCPSLAGLGVRNKKIV-IKDIHVYALGIYVDAAAAKSALSG- 533
           VEP TG+ FPA +   ++    L G+G+R K ++ +K+I VYA G+Y D    K  +   
Sbjct: 79  VEPKTGFSFPASIGDSRR----LLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDK 134

Query: 534 FKKKTAAELEADQSFYDAVVSTPSVEKSLRLVISSRLVDRKKFLDALEDRLAPRLKQAG 710
           +    A+E+  ++SF D ++    ++ ++RL I    ++ +   +A ++ +  RLK+ G
Sbjct: 135 YANLPASEIRGNKSFMDDLMEA-DIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFG 192

>sp|P03181|YHL1_EBV HYPOTHETICAL BHLF1 PROTEIN gi|73912|pir||QQBE3 BHLF1 protein -
           human herpesvirus 4 (strain B95-8)
           gi|23893591|emb|CAD53473.1| BHLF1 early reading frame
           [Human herpesvirus 4]
          Length = 660

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 61/203 (30%), Positives = 73/203 (35%), Gaps = 19/203 (9%)
 Frame = -1

Query: 828 GPPPWSPASCCPRT*TRFPDPSRSAPSRTGLGSCPACWARR---------PA*GGAPGGP 676
           GPPP    +   RT  R P   RSA +      CP  W RR         P  G  P GP
Sbjct: 251 GPPPTRSGAAAQRTHRRPPGCPRSARN----PGCPRTWRRRSGAQRGHPPPGAGQRPSGP 306

Query: 675 -------PERPGTSCGPPVAS**PGAATSPQTAWTPRHRRSSGPPLAPPPSSS*SRTGRT 517
                  P  PGT   P      PG   +  +  TP   R SGP  A PP+++       
Sbjct: 307 TGGRPAAPGAPGTPAAPG-----PGGGAAVPSGATPHPERGSGP--ADPPAAA------- 352

Query: 516 WRRRHPRRCPERKRGCP**QFSCCAPLGPPG*GKASSGSKAPQGTRSRSRAPRDLLRFPA 337
                 R  PER+            P  P     A      P  TRS + A R   R P 
Sbjct: 353 ------RLPPERQE-----------PRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPG 395

Query: 336 C---RVHPKCSR*GWRKESSARR 277
           C     +P C R  WR+ S A+R
Sbjct: 396 CPRSARNPGCPR-TWRRRSGAQR 417

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 61/203 (30%), Positives = 73/203 (35%), Gaps = 19/203 (9%)
 Frame = -1

Query: 828 GPPPWSPASCCPRT*TRFPDPSRSAPSRTGLGSCPACWARR---------PA*GGAPGGP 676
           GPPP    +   RT  R P   RSA +      CP  W RR         P  G  P GP
Sbjct: 376 GPPPTRSGAAAQRTHRRPPGCPRSARNP----GCPRTWRRRSGAQRGHPPPGAGQRPSGP 431

Query: 675 -------PERPGTSCGPPVAS**PGAATSPQTAWTPRHRRSSGPPLAPPPSSS*SRTGRT 517
                  P  PGT   P      PG   +  +  TP   R SGP  A PP+++       
Sbjct: 432 TGGRPAAPGAPGTPAAPG-----PGGGAAVPSGATPHPERGSGP--ADPPAAA------- 477

Query: 516 WRRRHPRRCPERKRGCP**QFSCCAPLGPPG*GKASSGSKAPQGTRSRSRAPRDLLRFPA 337
                 R  PER+            P  P     A      P  TRS + A R   R P 
Sbjct: 478 ------RLPPERQE-----------PRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPG 520

Query: 336 C---RVHPKCSR*GWRKESSARR 277
           C     +P C R  WR+ S A+R
Sbjct: 521 CPRSARNPGCPR-TWRRRSGAQR 542

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 50/167 (29%), Positives = 56/167 (32%), Gaps = 46/167 (27%)
 Frame = -1

Query: 828 GPPPWSPASCCPRT*TRFPDPSRSAPSRTGLGSCPACWARR---------PA*GGAPGGP 676
           GPPP    +   RT  R P   RSA +      CP  W RR         P  G  P GP
Sbjct: 501 GPPPTRSGAAAQRTHRRPPGCPRSARN----PGCPRTWRRRSGAQRGHPPPGAGQRPSGP 556

Query: 675 -------PERPGTSCGPPVAS**PGAATSPQTAWTPRHRRSSGP---------------- 565
                  P  PGT   P      PG   +  +  TP   R SGP                
Sbjct: 557 TGGRPAAPGAPGTPAAPG-----PGGGAAVPSGATPHPERGSGPADPPAAARLPPERQEP 611

Query: 564 ------------PLAPPPSSS*SRTGRTWRRRHPRRCPE--RKRGCP 466
                       P  PPP+ S +   RT RR  P  CP   R  GCP
Sbjct: 612 RLPQDLAAAQRCPAGPPPTRSGAAAQRTHRR--PPGCPRSARNPGCP 656

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 62/197 (31%), Positives = 72/197 (36%), Gaps = 11/197 (5%)
 Frame = -1

Query: 834 SPGPPP-------WSPASC-CPRT*TRFPDPSRSAPSRTGLGSCPACWARRPA*GGAPGG 679
           S GP P       WS  +  CPRT  R     R  P   G G  P+         G  GG
Sbjct: 135 SRGPRPHPAFQVQWSARNPGCPRTWRRRSGAQRGHPP-PGAGQRPS---------GPTGG 184

Query: 678 PPERPGTSCGPPVAS**PGAATSPQTAWTPRHRRSSGPPLAPPPSSS*SRTGRTWRRRHP 499
            P  PG   G P A    G A  P  A TP   R SGP  A PP+++             
Sbjct: 185 RPAAPGAP-GTPAAPGPGGGAAVPSGA-TPHPERGSGP--ADPPAAA------------- 227

Query: 498 RRCPERKRGCP**QFSCCAPLGPPG*GKASSGSKAPQGTRSRSRAPRDLLRFPAC---RV 328
           R  PER+            P  P     A      P  TRS + A R   R P C     
Sbjct: 228 RLPPERQE-----------PRLPQDLAAAQRCPAGPPPTRSGAAAQRTHRRPPGCPRSAR 276

Query: 327 HPKCSR*GWRKESSARR 277
           +P C R  WR+ S A+R
Sbjct: 277 NPGCPR-TWRRRSGAQR 292



EST assemble image


clone accession position
1 HC046e11_r AV635459 1 448
2 HC011c04_r AV632680 54 625
3 HC084d03_r AV638283 135 561
4 MX236d05_r BP091283 320 834




Chlamydomonas reinhardtii
Kazusa DNA Research Institute