KCC001851A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001851A_C01 KCC001851A_c01
CCACGCGTCCACCGTTACATTACTCCGCTTATCCAAGCCGCTCCACACAAGCTGCTAATT
TAGGCGGTCGCCACCTTGGGCTTGGCCTCAGAGCCCTCGCGGAAGCCGTTCTTGAAGCGC
CGGGCCAGCGTCTTCATGTACCGCATGCGGCCGGAGCCGGTGGTCTTGCGGCCAATGGCC
TTCTGCCCCCACTGGTAAGTCCGCTTGCGGGCAGCAGGGTAGCCGCACGCCGAGCAGACG
TGCTTCTGGTTGTGGTAGCTGGTGCGACCGCAACGACGGCACAGAGTGTGCGTCTTGTTG
CGGCGCTTACCGAAGCTTCCGGTACCCTTGCCCTTCTTGCCCATCTTTGAGCCGTGCTGG
CCCGGCGCAGTGATGCTGCTGGACAGCCTAAAGAGCGAGTGCGCCACACGCGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001851A_C01 KCC001851A_c01
         (413 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566535.1| 60S ribosomal protein L37 (RPL37C) [Arabidopsis...   144  3e-34
ref|NP_175640.1| 60S ribosomal protein L37 (RPL37B) [Arabidopsis...   142  1e-33
ref|NP_172977.1| 60S ribosomal protein L37 (RPL37A) [Arabidopsis...   138  2e-32
ref|NP_573005.1| CG9091-PA [Drosophila melanogaster] gi|20139854...   138  2e-32
gb|AAO25606.1| ribosomal protein L37A [Kluyveromyces delphensis]      133  7e-31

>ref|NP_566535.1| 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana]
           gi|21553481|gb|AAM62574.1| putative ribosomal protein
           [Arabidopsis thaliana]
          Length = 95

 Score =  144 bits (363), Expect = 3e-34
 Identities = 65/86 (75%), Positives = 73/86 (84%)
 Frame = -1

Query: 332 GKGTGSFGKRRNKTHTLCRRCGRTSYHNQKHVCSACGYPAARKRTYQWGQKAIGRKTTGS 153
           GKGTGSFGKRRNK+HTLC RCGR S+H QK  CSAC YPAARKRTY W  KAI RKTTG+
Sbjct: 2   GKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGT 61

Query: 152 GRMRYMKTLARRFKNGFREGSEAKPK 75
           GRMRY++ + RRFK GFREG+EAKP+
Sbjct: 62  GRMRYLRNVPRRFKTGFREGTEAKPR 87

>ref|NP_175640.1| 60S ribosomal protein L37 (RPL37B) [Arabidopsis thaliana]
           gi|20143906|sp|Q43292|RL37_ARATH 60S ribosomal protein
           L37 gi|25295102|pir||B96563 hypothetical protein
           F19K6.12 [imported] - Arabidopsis thaliana
           gi|12323122|gb|AAG51542.1|AC037424_7 60S ribosomal
           protein L37, putative; 56921-57860 [Arabidopsis
           thaliana] gi|13877907|gb|AAK44031.1|AF370216_1 putative
           60S ribosomal protein L37 [Arabidopsis thaliana]
           gi|21280805|gb|AAM44969.1| putative 60S ribosomal
           protein L37 [Arabidopsis thaliana]
          Length = 95

 Score =  142 bits (357), Expect = 1e-33
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = -1

Query: 329 KGTGSFGKRRNKTHTLCRRCGRTSYHNQKHVCSACGYPAARKRTYQWGQKAIGRKTTGSG 150
           KGTGSFGKRRNK+HTLC RCGR S+H QK  CSAC YPAARKRTY W  KAI RKTTG+G
Sbjct: 3   KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTG 62

Query: 149 RMRYMKTLARRFKNGFREGSEAKPK 75
           RMRY++ + RRFK GFREG+EAKP+
Sbjct: 63  RMRYLRNVPRRFKTGFREGTEAKPR 87

>ref|NP_172977.1| 60S ribosomal protein L37 (RPL37A) [Arabidopsis thaliana]
           gi|21537060|gb|AAM61401.1| putative 60s ribosomal
           protein L37 [Arabidopsis thaliana]
           gi|26452539|dbj|BAC43354.1| putative 60s ribosomal
           protein L37 [Arabidopsis thaliana]
           gi|28827304|gb|AAO50496.1| putative 60s ribosomal
           protein L37 [Arabidopsis thaliana]
          Length = 95

 Score =  138 bits (347), Expect = 2e-32
 Identities = 65/94 (69%), Positives = 74/94 (78%)
 Frame = -1

Query: 332 GKGTGSFGKRRNKTHTLCRRCGRTSYHNQKHVCSACGYPAARKRTYQWGQKAIGRKTTGS 153
           GKGTGSFGKRRNK+HTLC RCGR S+H QK  CSAC YPAARKRTY W  KAI RKTTG+
Sbjct: 2   GKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGT 61

Query: 152 GRMRYMKTLARRFKNGFREGSEAKPKVATA*ISS 51
           GRMRY++ + RRFK  FREG++A P+   A  SS
Sbjct: 62  GRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

>ref|NP_573005.1| CG9091-PA [Drosophila melanogaster]
           gi|20139854|sp|Q9VXX8|R37A_DROME Probable 60S ribosomal
           protein L37-A gi|7293042|gb|AAF48428.1| CG9091-PA
           [Drosophila melanogaster]
          Length = 93

 Score =  138 bits (347), Expect = 2e-32
 Identities = 61/89 (68%), Positives = 73/89 (81%)
 Frame = -1

Query: 329 KGTGSFGKRRNKTHTLCRRCGRTSYHNQKHVCSACGYPAARKRTYQWGQKAIGRKTTGSG 150
           KGT SFGKR NKTHTLCRRCGR+SYH QK  C+ CGYPAA+ R+Y W  KA  RKTTG+G
Sbjct: 3   KGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTG 62

Query: 149 RMRYMKTLARRFKNGFREGSEAKPKVATA 63
           RM+++K + RRF+NGFREG++AKPK A A
Sbjct: 63  RMQHLKVVRRRFRNGFREGTQAKPKKAVA 91

>gb|AAO25606.1| ribosomal protein L37A [Kluyveromyces delphensis]
          Length = 87

 Score =  133 bits (334), Expect = 7e-31
 Identities = 59/84 (70%), Positives = 69/84 (81%)
 Frame = -1

Query: 332 GKGTGSFGKRRNKTHTLCRRCGRTSYHNQKHVCSACGYPAARKRTYQWGQKAIGRKTTGS 153
           GKGT SFGKR NK+HTLC RCGR S+H QK  CSACGYPAA+ R+Y WGQKA  R TTG+
Sbjct: 2   GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSACGYPAAKTRSYNWGQKAKRRHTTGT 61

Query: 152 GRMRYMKTLARRFKNGFREGSEAK 81
           GRMRY+K ++RRFKNGF+ G+ AK
Sbjct: 62  GRMRYLKHVSRRFKNGFQSGTAAK 85



EST assemble image


clone accession position
1 HC010a09_r AV632589 1 467
2 HCL069h07_r AV643452 19 469
3 HCL068d09_r AV643365 57 418




Chlamydomonas reinhardtii
Kazusa DNA Research Institute