KCC001846A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001846A_C01 KCC001846A_c01
atagcgctttCATAGAATTCGAAAGCCACAATGACAGCGTGGACCGGGCGTCGTGCACTC
CTGGACGACGATGACGAATTCGACTTCAAGAAGTTGTTCTTGCACCATCTGGCGCCGGGG
CTGGGATGTATTATCGCGTTCCTCATGTTTGTGAGCCCGCTGAAGACGGTGCTGCAAATT
CGTGCCAACAAGCACCTTGGGGACCTGAACCCACTGCCGCTGGTGGCCATCATCGCCAAC
TGCGCCGCCTGGCTCATCTACGGATGCATCAACGCCGACCCCTATGTCATTACAGCCAAC
GAGCCGGGCCTGCTGCTGGGTATTTTCATGACCGTGTCTTGCTACGGCTTCGCAGACCCC
AAGGCCCGCGACGTGATGCTGAAGGCGCTCATGTTCTTCGCGGTGCTGCTGAGCGCTGTG
GGCATTGCCATCGCGCTGTTCATCGAGGAGGACGAGACAGCGTCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001846A_C01 KCC001846A_c01
         (466 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersic...    56  2e-07
ref|NP_567366.1| nodulin MtN3 family protein [Arabidopsis thalia...    53  2e-06
dbj|BAB10854.1| contains similarity to MtN3 protein~gene_id:MQB2...    52  3e-06
gb|AAM64306.1| contains similarity to nodulin MtN3 protein [Arab...    48  6e-05
ref|NP_566829.1| nodulin MtN3 family protein [Arabidopsis thalia...    47  8e-05

>emb|CAE47557.1| seven-transmembrane-domain protein 1 [Lycopersicon esculentum]
          Length = 238

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 33/111 (29%), Positives = 58/111 (51%), Gaps = 3/111 (2%)
 Frame = +1

Query: 121 LGCIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADP---YVI 291
           +G +I+F +F+SP  T +QI   K + +  P P +A + NCA W+ YG     P    VI
Sbjct: 14  IGNVISFFLFLSPGPTFVQILKAKSVMEFKPDPYIATVLNCAVWVFYGMPFVHPDSLLVI 73

Query: 292 TANEPGLLLGIFMTVSCYGFADPKARDVMLKALMFFAVLLSAVGIAIALFI 444
           T N  GL + +      + ++D   R  ++      A+++ A+ +AI +F+
Sbjct: 74  TINGFGLAIELLYVSIFFIYSDWSKRQKII-----IALVIEAIFMAILIFV 119

>ref|NP_567366.1| nodulin MtN3 family protein [Arabidopsis thaliana]
           gi|21592843|gb|AAM64793.1| contains similarity to
           Medicago truncatula MtN3 (GB:Y08726) [Arabidopsis
           thaliana]
          Length = 258

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
 Frame = +1

Query: 121 LGCIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADP---YVI 291
           +G  IA  +F+SP  T ++I   K + + +P+P +A + NC  W++YG     P    VI
Sbjct: 16  IGNFIALCLFLSPTPTFVRIVKKKSVEEYSPIPYLATLINCLVWVLYGLPTVHPDSTLVI 75

Query: 292 TANEPGLLLGIFMTVSCYGFADPKARDVMLKALMFFAVLLSAVGIAIALFIE 447
           T N  G+L+ I      + +   + + +++ A++       A+   + L ++
Sbjct: 76  TINGTGILIEIVFLTIFFVYCGRQKQRLIISAVIAAETAFIAILAVLVLTLQ 127

 Score = 35.0 bits (79), Expect = 0.42
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 127 CIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADPYVITANEP 306
           C+   +M+ SPL  +  +   K +  +     VA   N   W IY  +  DP++   N  
Sbjct: 142 CVFNVMMYASPLSVMKMVIKTKSVEFMPFWLSVAGFLNAGVWTIYALMPFDPFMAIPNGI 201

Query: 307 GLLLGI 324
           G L G+
Sbjct: 202 GCLFGL 207

>dbj|BAB10854.1| contains similarity to MtN3 protein~gene_id:MQB2.17 [Arabidopsis
           thaliana]
          Length = 213

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +1

Query: 121 LGCIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADP---YVI 291
           +G +I+F +F +P+ T+++I   K + +  P P VA + NC  W  YG     P    VI
Sbjct: 14  VGNVISFGLFCAPIPTMVKIWKMKSVSEFKPDPYVATVLNCMMWTFYGLPFVQPDSLLVI 73

Query: 292 TANEPGLLLGIFMTVSCYGFADPKARDVMLKALMFFAVLLSAVGIAIALFIEEDETAS 465
           T N  GL + +      + FA    R  +  A++   + ++ V      F+   +  S
Sbjct: 74  TINGTGLFMELVYVTIFFVFATSPVRRKITIAMVIEVIFMAVVIFCTMYFLHTTKQRS 131

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 118 GLGCIIA-FLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADPYVI 291
           G+ CI+   +M+ +PL  +  +   K +  +     +A   N   W+IY C+  DPY++
Sbjct: 135 GILCIVFNVIMYAAPLTVMKLVIKTKSVKYMPFFLSLANFMNGVVWVIYACLKFDPYIL 193

>gb|AAM64306.1| contains similarity to nodulin MtN3 protein [Arabidopsis thaliana]
          Length = 251

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +1

Query: 124 GCIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADP---YVIT 294
           G +I+  +F+SP+ T + I   K + +    P +A + NCA W+ YG     P    VIT
Sbjct: 15  GNVISLFLFLSPIPTFITIYKKKKVEEYKADPYLATVLNCALWVFYGLPMVQPDSLLVIT 74

Query: 295 ANEPGLLLGIFMTVSCYGFADPKARDV 375
            N  GL + + + ++ + F  P +R V
Sbjct: 75  INGTGLAIEV-VYLAIFFFFSPTSRKV 100

>ref|NP_566829.1| nodulin MtN3 family protein [Arabidopsis thaliana]
           gi|16226222|gb|AAL16107.1|AF428275_1 unknown protein
           [Arabidopsis thaliana] gi|25090096|gb|AAN72227.1|
           At3g28008/At3g28008 [Arabidopsis thaliana]
          Length = 251

 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +1

Query: 124 GCIIAFLMFVSPLKTVLQIRANKHLGDLNPLPLVAIIANCAAWLIYGCINADP---YVIT 294
           G +I+  +F+SP+ T + I   K + +    P +A + NCA W+ YG     P    VIT
Sbjct: 15  GNVISLFLFLSPIPTFITIYKKKKVEEYKADPYLATVLNCALWVFYGLPMVQPDSLLVIT 74

Query: 295 ANEPGLLLGIFMTVSCYGFADPKARDV 375
            N  GL + + + ++ + F  P +R V
Sbjct: 75  INGTGLAIEL-VYLAIFFFFSPTSRKV 100



EST assemble image


clone accession position
1 MX209b02_r BP089524 1 449
2 HC009d03_r AV632530 11 466




Chlamydomonas reinhardtii
Kazusa DNA Research Institute