KCC001844A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001844A_C01 KCC001844A_c01
gaagatgacgcccgagcagcgcaaggcatccgctgtgccgcgcgtgtgcgtcatcggcgg
caaggccgcctccgcctacgACATGGCCAAGCGCATCATCCGCCTCGTCACCGCCGTGGG
CGAAGTCATCAACAAGGACCCCGAGACCAAGGACTACCTGCGCCTGTACTTCCTGCCCGA
CTACAACGTGACCCTGGCCGAGACCATCATCCCCGCCGCCGAGCTGTCGCAGCACATCTC
CACCGCGGGCACTGAGGCTTCGGGCACGTCCAACATGAAGTTCCAGATGAACGGTTGCCT
GATCATGGGCACCTGGGACGGCGCCAACATTGAGATCGCGGAGGAGACGGGCGTGGAGAA
CGTCTTCGTGTTCGGCGTGCGCGCCGAGGAGATCAACCAGCTGCGCAAGGACCGCAAGAA
CTTCAAGACCGACCCCCGGTGGGACGAGCTGATGAAGGACATTGAGGGCGGCATGTTCGG
CGACAAGGACTACTTCAAGCCGCTGGTGGACAGCGTCAACAACATGAAGGTGGGCAACGA
CTGGTTCCTGCTGGCCAACGACTTCGCCGGCTACCTGGCGGCACAGGAGGAGGTGGACGC
CACCTACAAGGACCAGGCGGAGTGGCTGCGCCGGTCGATCATGTACACGGCCGGCAGCGG
CAAGTTCTCCAGTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001844A_C01 KCC001844A_c01
         (675 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P32811|PHSH_SOLTU ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STAR...   252  4e-66
ref|NP_190281.1| starch phosphorylase, putative [Arabidopsis tha...   249  2e-65
gb|AAL10498.1| AT3g46970/F13I12_20 [Arabidopsis thaliana]             249  2e-65
gb|AAM29154.1| starch phosphorylase type H [Citrus hybrid cultivar]   246  2e-64
sp|P53537|PHSH_VICFA ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STAR...   244  9e-64

>sp|P32811|PHSH_SOLTU ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STARCH PHOSPHORYLASE H)
            gi|100452|pir||A40995 starch phosphorylase (EC 2.4.1.1) H
            [similarity] - potato gi|169473|gb|AAA33809.1|
            alpha-glucan phosphorylase type H isozyme
          Length = 838

 Score =  252 bits (643), Expect = 4e-66
 Identities = 127/227 (55%), Positives = 169/227 (73%), Gaps = 4/227 (1%)
 Frame = +2

Query: 5    MTPEQRKASAVPRVCVIGGKAASAYDMAKRIIRLVTAVGEVINKDPETKDYLRLYFLPDY 184
            M+PE+RK +  PR  +IGGKA + Y  AKRI++LVT VG+V+N DP+  DYL++ F+P+Y
Sbjct: 594  MSPEERK-NTTPRTVMIGGKAFATYTNAKRIVKLVTDVGDVVNSDPDVNDYLKVVFVPNY 652

Query: 185  NVTLAETIIPAAELSQHISTAGTEASGTSNMKFQMNGCLIMGTWDGANIEIAEETGVENV 364
            NV++AE +IP +ELSQHISTAG EASGTSNMKF +NGCLI+GT DGAN+EI EE G +N 
Sbjct: 653  NVSVAEMLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNF 712

Query: 365  FVFGVRAEEINQLRKDRKN--FKTDPRWDELMKDIEGGMFGDKDYFKPLVDSV--NNMKV 532
            F+FG  A+E+ QLRKDR+N  FK DPR++E  + I  G FG  DY  PL++S+  N+   
Sbjct: 713  FLFGATADEVPQLRKDRENGLFKPDPRFEEAKQFIRSGAFGTYDY-NPLLESLEGNSGYG 771

Query: 533  GNDWFLLANDFAGYLAAQEEVDATYKDQAEWLRRSIMYTAGSGKFSS 673
              D+FL+ +DF  Y+ AQ  VD  YKD+  W++ SI+ T+GSGKFSS
Sbjct: 772  RGDYFLVGHDFPSYMDAQARVDEAYKDRKRWIKMSILSTSGSGKFSS 818

>ref|NP_190281.1| starch phosphorylase, putative [Arabidopsis thaliana]
            gi|14916634|sp|Q9SD76|PHSH_ARATH Alpha-glucan
            phosphorylase, H isozyme (Starch phosphorylase H)
            gi|11257928|pir||T45633 starch phosphorylase (EC 2.4.1.1)
            H, cytosolic F13I12.20 [similarity] - Arabidopsis
            thaliana gi|6522578|emb|CAB61943.1| starch phosphorylase
            H (cytosolic form)-like protein [Arabidopsis thaliana]
            gi|19699065|gb|AAL90900.1| AT3g46970/F13I12_20
            [Arabidopsis thaliana] gi|27764912|gb|AAO23577.1|
            At3g46970/F13I12_20 [Arabidopsis thaliana]
          Length = 841

 Score =  249 bits (637), Expect = 2e-65
 Identities = 128/228 (56%), Positives = 171/228 (74%), Gaps = 4/228 (1%)
 Frame = +2

Query: 2    KMTPEQRKASAVPRVCVIGGKAASAYDMAKRIIRLVTAVGEVINKDPETKDYLRLYFLPD 181
            +M PE+RK + VPR  +IGGKA + Y  AKRI++LV  VG+V+N DPE  +YL++ F+P+
Sbjct: 596  EMKPEERKKT-VPRTVMIGGKAFATYTNAKRIVKLVNDVGDVVNSDPEVNEYLKVVFVPN 654

Query: 182  YNVTLAETIIPAAELSQHISTAGTEASGTSNMKFQMNGCLIMGTWDGANIEIAEETGVEN 361
            YNVT+AE +IP +ELSQHISTAG EASGTSNMKF +NGCLI+GT DGAN+EI EE G EN
Sbjct: 655  YNVTVAEMLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEVGEEN 714

Query: 362  VFVFGVRAEEINQLRKDRKN--FKTDPRWDELMKDIEGGMFGDKDYFKPLVDSV-NNMKV 532
             F+FG  A+++ +LRK+R++  FK DPR++E  + ++ G+FG  DY  PL+DS+  N   
Sbjct: 715  FFLFGATADQVPRLRKEREDGLFKPDPRFEEAKQFVKSGVFGSYDY-GPLLDSLEGNTGF 773

Query: 533  G-NDWFLLANDFAGYLAAQEEVDATYKDQAEWLRRSIMYTAGSGKFSS 673
            G  D+FL+  DF  Y+ AQ +VD  YKD+  WL+ SI+ TAGSGKFSS
Sbjct: 774  GRGDYFLVGYDFPSYMDAQAKVDEAYKDRKGWLKMSILSTAGSGKFSS 821

>gb|AAL10498.1| AT3g46970/F13I12_20 [Arabidopsis thaliana]
          Length = 841

 Score =  249 bits (637), Expect = 2e-65
 Identities = 128/228 (56%), Positives = 171/228 (74%), Gaps = 4/228 (1%)
 Frame = +2

Query: 2    KMTPEQRKASAVPRVCVIGGKAASAYDMAKRIIRLVTAVGEVINKDPETKDYLRLYFLPD 181
            +M PE+RK + VPR  +IGGKA + Y  AKRI++LV  VG+V+N DPE  +YL++ F+P+
Sbjct: 596  EMKPEERKKT-VPRTVMIGGKAFATYTNAKRIVKLVNDVGDVVNSDPEVNEYLKVVFVPN 654

Query: 182  YNVTLAETIIPAAELSQHISTAGTEASGTSNMKFQMNGCLIMGTWDGANIEIAEETGVEN 361
            YNVT+AE +IP +ELSQHISTAG EASGTSNMKF +NGCLI+GT DGAN+EI EE G EN
Sbjct: 655  YNVTVAEMLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEVGEEN 714

Query: 362  VFVFGVRAEEINQLRKDRKN--FKTDPRWDELMKDIEGGMFGDKDYFKPLVDSV-NNMKV 532
             F+FG  A+++ +LRK+R++  FK DPR++E  + ++ G+FG  DY  PL+DS+  N   
Sbjct: 715  FFLFGATADQVPRLRKEREDGLFKPDPRFEEAKQFVKSGVFGSYDY-GPLLDSLEGNTGF 773

Query: 533  G-NDWFLLANDFAGYLAAQEEVDATYKDQAEWLRRSIMYTAGSGKFSS 673
            G  D+FL+  DF  Y+ AQ +VD  YKD+  WL+ SI+ TAGSGKFSS
Sbjct: 774  GRGDYFLVGYDFPSYMDAQAKVDEAYKDRKGWLKMSILSTAGSGKFSS 821

>gb|AAM29154.1| starch phosphorylase type H [Citrus hybrid cultivar]
          Length = 840

 Score =  246 bits (628), Expect = 2e-64
 Identities = 126/228 (55%), Positives = 168/228 (73%), Gaps = 4/228 (1%)
 Frame = +2

Query: 2    KMTPEQRKASAVPRVCVIGGKAASAYDMAKRIIRLVTAVGEVINKDPETKDYLRLYFLPD 181
            +M+P++RK +  PR  + GGKA + Y  AKRI++LV  VGEV+N DPE   YL++ F+P+
Sbjct: 595  EMSPQERKKTT-PRTIMFGGKAFATYTNAKRIVKLVNDVGEVVNTDPEVNSYLKVVFVPN 653

Query: 182  YNVTLAETIIPAAELSQHISTAGTEASGTSNMKFQMNGCLIMGTWDGANIEIAEETGVEN 361
            YNV++AE +IP +ELSQHISTAG EASGTSNMKF +NGCLI+GT DGAN+EI +E G EN
Sbjct: 654  YNVSVAELLIPGSELSQHISTAGMEASGTSNMKFSLNGCLIIGTLDGANVEIRQEIGEEN 713

Query: 362  VFVFGVRAEEINQLRKDRKN--FKTDPRWDELMKDIEGGMFGDKDYFKPLVDSV-NNMKV 532
             F+FG  A+++ +LRK+R++  FK DPR++E  + I  G FG  DY  PL+DS+  N   
Sbjct: 714  FFLFGAGADQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDY-NPLLDSLEGNTGY 772

Query: 533  G-NDWFLLANDFAGYLAAQEEVDATYKDQAEWLRRSIMYTAGSGKFSS 673
            G  D+FL+  DF  YL AQ+ VD  YKD+ +WL+ SI+ TAGSGKFSS
Sbjct: 773  GRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSS 820

>sp|P53537|PHSH_VICFA ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STARCH PHOSPHORYLASE H)
            gi|7433824|pir||T12091 starch phosphorylase (EC 2.4.1.1)
            H, cytosolic isoform - fava bean
            gi|510932|emb|CAA84494.1| alpha 1,4-glucan phosphorylase
            type H [Vicia faba var. minor]
          Length = 842

 Score =  244 bits (623), Expect = 9e-64
 Identities = 127/228 (55%), Positives = 166/228 (72%), Gaps = 4/228 (1%)
 Frame = +2

Query: 2    KMTPEQRKASAVPRVCVIGGKAASAYDMAKRIIRLVTAVGEVINKDPETKDYLRLYFLPD 181
            +M+PE+RK S   R  +IGGKA + Y  AKRI++LV  VG V+N DPE   YL++ F+P+
Sbjct: 597  EMSPEERK-STTARTVMIGGKAFATYTNAKRIVKLVDDVGSVVNSDPEVNSYLKVVFVPN 655

Query: 182  YNVTLAETIIPAAELSQHISTAGTEASGTSNMKFQMNGCLIMGTWDGANIEIAEETGVEN 361
            YNV++AE +IP +ELSQHISTAG EASGTSNMKF +N  LI+GT DGAN+EI EE G EN
Sbjct: 656  YNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNRVLIIGTLDGANVEIREEIGEEN 715

Query: 362  VFVFGVRAEEINQLRKDRKN--FKTDPRWDELMKDIEGGMFGDKDYFKPLVDSV--NNMK 529
             F+FG  A+E+ +LRK+R+N  FK DPR++E  K I  G+FG  DY  PL+DS+  N+  
Sbjct: 716  FFLFGATADEVPRLRKERENGLFKPDPRFEEAKKFIRSGVFGSYDY-NPLLDSLEGNSGY 774

Query: 530  VGNDWFLLANDFAGYLAAQEEVDATYKDQAEWLRRSIMYTAGSGKFSS 673
               D+FL+  DF  Y+ AQE+VD  Y+D+  WL+ SI+ TAGSGKFSS
Sbjct: 775  GRGDYFLVGYDFPSYMDAQEKVDEAYRDKKRWLKMSILSTAGSGKFSS 822



EST assemble image


clone accession position
1 MX015d05_r BP086724 1 387
2 HC009b10_r AV632514 166 648
3 HC093g12_r AV639014 262 675




Chlamydomonas reinhardtii
Kazusa DNA Research Institute