KCC001836A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001836A_C01 KCC001836A_c01
ctCGAATTCGAAAGCTTGCTACGTGCTTAGAATAGGGAACCGCTGCTGCGGGCACTGCGC
ATAAGGTCTTCCATTCTACTACCTCAGCCACTCGCTGGAGTGCACTTGAATCAACATGCA
GACCACCGTGCTCCGTTCTTCCACTCGTGTGGGATGTGTGCGTCCAGTGGGCCTGGCTCG
TGCGCTGCCGGTGCGCCCGGTGGTGTTTGGGTCGCGCACGCCGATGCTTCTGCGCTCGGC
GAAGAAGGACGATGGATACATCTCCGAGGATGAGGGCCTGGGCAATGTTGCTGCTGACTA
CTGCGCCATCGACGGCGCTGGCAAGAAGGCTAAGCGCTCTCTCGGCGAGATGGAGCAGGA
GTTCCTTGCGGCGATGACCTCGTGGTACTACGAGGGCAAGCCCACCATGTCCGATGAGGA
GTTCAGCCTGCTGAAGGAGGAGCTGATCTGGTCCGGCAGCATGGTCGCTGTGCTGAGCAG
CGACGAGCAGCGTTTCCTGGAGGCGTCCATGGCCTACGCCAAGGGCAAGCCCATTATGAC
TGACGAGGACTACGATGCCCTGAAGGCTGAGCTGCGCAACAAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001836A_C01 KCC001836A_c01
         (584 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|289508...   130  1e-29
ref|NP_192933.1| hypothetical protein [Arabidopsis thaliana] gi|...   130  1e-29
gb|AAP21396.1| unknown protein [Oryza sativa (japonica cultivar-...   127  1e-28
ref|NP_567672.1| expressed protein [Arabidopsis thaliana] gi|306...   120  1e-26
pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana...   119  2e-26

>dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|28950891|gb|AAO63369.1|
           At4g11960 [Arabidopsis thaliana]
          Length = 313

 Score =  130 bits (327), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 98/147 (65%)
 Frame = +2

Query: 137 SSTRVGCVRPVGLARALPVRPVVFGSRTPMLLRSAKKDDGYISEDEGLGNVAADYCAIDG 316
           SS+R  C  P    R++ +R  +    T + L+++    G +  +E + +    YC+I+ 
Sbjct: 21  SSSRTQCPAPFTHGRSISLRRRL----TLLPLKASTDQSGQVGGEE-VDSKILPYCSIN- 74

Query: 317 AGKKAKRSLGEMEQEFLAAMTSWYYEGKPTMSDEEFSLLKEELIWSGSMVAVLSSDEQRF 496
             K  KR++GEMEQEFL AM S+YYEGK  MS+EEF  LKEEL+W GS V +LSSDEQRF
Sbjct: 75  --KNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRF 132

Query: 497 LEASMAYAKGKPIMTDEDYDALKAELR 577
           LEASMAY  G PI++DE+YD LK +L+
Sbjct: 133 LEASMAYVSGNPILSDEEYDKLKMKLK 159

>ref|NP_192933.1| hypothetical protein [Arabidopsis thaliana] gi|7485578|pir||T06603
           hypothetical protein F16J13.30 - Arabidopsis thaliana
           gi|4586101|emb|CAB40937.1| putative protein [Arabidopsis
           thaliana] gi|7267897|emb|CAB78239.1| putative protein
           [Arabidopsis thaliana]
          Length = 338

 Score =  130 bits (327), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 98/147 (65%)
 Frame = +2

Query: 137 SSTRVGCVRPVGLARALPVRPVVFGSRTPMLLRSAKKDDGYISEDEGLGNVAADYCAIDG 316
           SS+R  C  P    R++ +R  +    T + L+++    G +  +E + +    YC+I+ 
Sbjct: 21  SSSRTQCPAPFTHGRSISLRRRL----TLLPLKASTDQSGQVGGEE-VDSKILPYCSIN- 74

Query: 317 AGKKAKRSLGEMEQEFLAAMTSWYYEGKPTMSDEEFSLLKEELIWSGSMVAVLSSDEQRF 496
             K  KR++GEMEQEFL AM S+YYEGK  MS+EEF  LKEEL+W GS V +LSSDEQRF
Sbjct: 75  --KNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRF 132

Query: 497 LEASMAYAKGKPIMTDEDYDALKAELR 577
           LEASMAY  G PI++DE+YD LK +L+
Sbjct: 133 LEASMAYVSGNPILSDEEYDKLKMKLK 159

>gb|AAP21396.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 324

 Score =  127 bits (318), Expect = 1e-28
 Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
 Frame = +2

Query: 209 GSRTPMLLRSAKKDDGYISEDEGLGNVAADYCAIDGAGKKA-KRSLGEMEQEFLAAMTSW 385
           G R  +     ++  G    DE + +    YC+IDG GKKA KRSLGEMEQEFL A+ ++
Sbjct: 49  GRRLRLGATDQQQQQGKQDGDEVVDSNVLQYCSIDGKGKKAEKRSLGEMEQEFLQALQAF 108

Query: 386 YYEGKPTMSDEEFSLLKEELIWSGSMVAVLSSDEQRFLEASMAYAKGKPIMTDEDYDALK 565
           YY+ K  MS+EEF  LKEEL+W GS V +LS DEQR LEASMAYA G PIM+D ++D LK
Sbjct: 109 YYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDEQRLLEASMAYAAGNPIMSDAEFDQLK 168

Query: 566 AELR 577
             L+
Sbjct: 169 LRLK 172

>ref|NP_567672.1| expressed protein [Arabidopsis thaliana]
           gi|30685973|ref|NP_849422.1| expressed protein
           [Arabidopsis thaliana] gi|30685977|ref|NP_849423.1|
           expressed protein [Arabidopsis thaliana]
           gi|24030260|gb|AAN41305.1| unknown protein [Arabidopsis
           thaliana]
          Length = 324

 Score =  120 bits (301), Expect = 1e-26
 Identities = 63/115 (54%), Positives = 81/115 (69%)
 Frame = +2

Query: 233 RSAKKDDGYISEDEGLGNVAADYCAIDGAGKKAKRSLGEMEQEFLAAMTSWYYEGKPTMS 412
           ++  +  G +  D    NV   YC+I+ A KK   ++GEMEQEFL A+ S+YY+GK  MS
Sbjct: 60  KATTEQSGPVGGDNVDSNVLP-YCSINKAEKK---TIGEMEQEFLQALQSFYYDGKAIMS 115

Query: 413 DEEFSLLKEELIWSGSMVAVLSSDEQRFLEASMAYAKGKPIMTDEDYDALKAELR 577
           +EEF  LKEEL+W GS V +LSSDEQRFLEASMAY  G PI+ DE+YD LK +L+
Sbjct: 116 NEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLK 170

>pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana
           gi|3292814|emb|CAA19804.1| putative protein [Arabidopsis
           thaliana] gi|7269136|emb|CAB79244.1| putative protein
           [Arabidopsis thaliana]
          Length = 340

 Score =  119 bits (299), Expect = 2e-26
 Identities = 59/93 (63%), Positives = 73/93 (78%)
 Frame = +2

Query: 299 YCAIDGAGKKAKRSLGEMEQEFLAAMTSWYYEGKPTMSDEEFSLLKEELIWSGSMVAVLS 478
           YC+I+ A KK   ++GEMEQEFL A+ S+YY+GK  MS+EEF  LKEEL+W GS V +LS
Sbjct: 79  YCSINKAEKK---TIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLS 135

Query: 479 SDEQRFLEASMAYAKGKPIMTDEDYDALKAELR 577
           SDEQRFLEASMAY  G PI+ DE+YD LK +L+
Sbjct: 136 SDEQRFLEASMAYVSGNPILNDEEYDKLKLKLK 168



EST assemble image


clone accession position
1 LCL026c05_r AV627404 1 375
2 MXL014b04_r BP093810 3 440
3 HC008c01_r AV632436 8 465
4 LCL058d05_r AV629416 15 434
5 LCL082f01_r AV630679 23 375
6 LCL090h07_r AV631249 26 490
7 MX001g09_r BP086093 39 455
8 MXL069c01_r BP097049 43 241
9 LCL011g12_r AV626580 44 438
10 MXL043f09_r BP095550 131 591




Chlamydomonas reinhardtii
Kazusa DNA Research Institute