KCC001834A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001834A_C01 KCC001834A_c01
cgcctgcagtacatacaACAAAATGGCCATGATCGCTCTGAAGCCCGCGTCGTCGTCGGT
GGCGCGTCGCCTGCAGACCTCGCAGGTGGCTGTGGCGCCTCGCGTCGCTCGCCGCTCCCT
GCAAGTTCGCGCGCTTCTGGGCCCCGATGGCAAGCCCGGCACCACCAGCGGCAAGAAGTT
CATCTCGCGTGAGCAGGAGCCGGAGCAGTACTGGAGCAGCAAGGGCGAGGCCGAGGGCGG
CAACCCCATGAAGGACCCCCTGGCCATCATCGGCGTCCTGGCTATCTTCTTCCCCTTCAT
CTTCCTGGGCATTGCCGTGGCAGCCGGCTACATTGACCTGTCCGTGTACAGGTAAACAGC
TCTGCACCGGCTTGTTGGCTGGATGTTGGTAATCTGTAAGCCGTGGCGAGGCGGCTGCAA
GTGTATCACACAGCGGTGGAGAGGGCGGACGGCATCCGATGGCGCATGGCAGCGACCGAC
CGAGGCTGCACAGGTGGCGCCAGGATGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001834A_C01 KCC001834A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO38007.1| unknown protein [Oryza sativa (japonica cultivar-...    74  1e-12
gb|AAM67182.1| unknown [Arabidopsis thaliana]                          73  2e-12
gb|AAO22809.1| unknown protein [Arabidopsis thaliana]                  72  4e-12
ref|NP_193086.1| expressed protein [Arabidopsis thaliana] gi|748...    72  4e-12
gb|AAM65826.1| unknown [Arabidopsis thaliana]                          72  5e-12

>gb|AAO38007.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 118

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 47/116 (40%), Positives = 64/116 (54%), Gaps = 7/116 (6%)
 Frame = +2

Query: 20  KMAMIALKPASSSVARRLQTSQVAVAPRVARRSLQVR-----ALLGPDG--KPGTTSGKK 178
           K+A+ +L     + A  +Q S+   +     R + VR     A LG DG  KP     KK
Sbjct: 3   KVALSSLLAVGGAAAFAVQPSKKTGSGLFRNRVITVRRPRISANLGGDGEVKPAGNK-KK 61

Query: 179 FISREQEPEQYWSSKGEAEGGNPMKDPLAIIGVLAIFFPFIFLGIAVAAGYIDLSV 346
           FI+RE+EPEQYW + GE +G NPMK PL  I +  +  PF+ L IA A G+I + V
Sbjct: 62  FITREEEPEQYWQAAGERKGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPV 117

>gb|AAM67182.1| unknown [Arabidopsis thaliana]
          Length = 125

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
 Frame = +2

Query: 8   STYNKMAMIALKPASSSVARRLQTSQVAVAPR-VARRSLQVRALLGP-DGKPGTTSGKKF 181
           S+++  A  +   +SSS +  L   Q    P  +     ++ A LG  DG+      KKF
Sbjct: 10  SSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPLGFPKFKLHAKLGGGDGEVKPKDKKKF 69

Query: 182 ISREQEPEQYWSSKGEAEGGNPMKDPLAIIGVLAIFFPFIFLGIAVAAGYIDLSV 346
           I++E+EPEQYW S GE EG NPMK PL  I +  I  PF+ L IA A G+I + +
Sbjct: 70  ITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGISTPFVILAIAFANGWIKVPI 124

>gb|AAO22809.1| unknown protein [Arabidopsis thaliana]
          Length = 119

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
 Frame = +2

Query: 8   STYNKMAMIALKPASSSVARRLQTSQVAVAPR-VARRSLQVRALLGP-DGKPGTTSGKKF 181
           S+++  A  +   +SSS +  L   Q    P  +     ++ A LG  DG+      KKF
Sbjct: 4   SSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPLGFPEFKLHAKLGGGDGEVKPKDKKKF 63

Query: 182 ISREQEPEQYWSSKGEAEGGNPMKDPLAIIGVLAIFFPFIFLGIAVAAGYIDLSV 346
           I++E+EPEQYW S GE EG NPMK PL  I +  +  PF+ L IA A G+I + +
Sbjct: 64  ITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPI 118

>ref|NP_193086.1| expressed protein [Arabidopsis thaliana] gi|7487747|pir||T06652
           hypothetical protein T6G15.50 - Arabidopsis thaliana
           gi|4678376|emb|CAB41108.1| putative protein [Arabidopsis
           thaliana] gi|7268053|emb|CAB78392.1| putative protein
           [Arabidopsis thaliana]
          Length = 125

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
 Frame = +2

Query: 8   STYNKMAMIALKPASSSVARRLQTSQVAVAPR-VARRSLQVRALLGP-DGKPGTTSGKKF 181
           S+++  A  +   +SSS +  L   Q    P  +     ++ A LG  DG+      KKF
Sbjct: 10  SSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPLGFPEFKLHAKLGGGDGEVKPKDKKKF 69

Query: 182 ISREQEPEQYWSSKGEAEGGNPMKDPLAIIGVLAIFFPFIFLGIAVAAGYIDLSV 346
           I++E+EPEQYW S GE EG NPMK PL  I +  +  PF+ L IA A G+I + +
Sbjct: 70  ITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPI 124

>gb|AAM65826.1| unknown [Arabidopsis thaliana]
          Length = 125

 Score = 71.6 bits (174), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 44/69 (63%)
 Frame = +2

Query: 140 GPDGKPGTTSGKKFISREQEPEQYWSSKGEAEGGNPMKDPLAIIGVLAIFFPFIFLGIAV 319
           G DG+      KKFI++E+EPEQYW S GE EG NPMK PL  I +  +  PF+ L IA 
Sbjct: 56  GRDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAF 115

Query: 320 AAGYIDLSV 346
           A G+I + +
Sbjct: 116 ANGWIKVPI 124



EST assemble image


clone accession position
1 HC022d09_r AV633570 1 468
2 LC039e10_r AV621679 18 489
3 HC007e02_r AV632380 26 510
4 LC098f03_r AV625838 27 498




Chlamydomonas reinhardtii
Kazusa DNA Research Institute