KCC001833A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001833A_C01 KCC001833A_c01
ctgCAAGGTCGCTGCGTCTCACATACTCGAACTAGACTAGCTAGCTTGCGACCCGTCGCC
AACACAATTAGCTCGACTAACATGGTCTCTGTCGCTGCGGCGCCGAGCACATCGGTATCC
GTGGCTCCCAAGAAGGGCACTGCGGAGGCCACTGCAGCTCGCTCCTATCACGATGATATG
AAGTGCGTTTTGTGGACGGCGAGCGACCTTTCAAGCCGCATAGCTGAGCTTGGCAGGCAA
ATTGCTACTGACTACGAGGGCAAGGCCCCGCTGGTGTTGGGGGTGTTGAAAGGCTCGTTC
ATGTTCTACTCGGACCTCGTGCGTGCCATCGAGCCATGCCCTCGTGGCCTGACGATGGAC
TTCATCCGCGCATCAAGCTACGGTTCGGGGACAGAGTCGACGGGCGACGTCAAGCTCAAA
ACGGACCTGAAGAAGGAGAAGGTGGCGGGGCGGCACGTGTTGCTGGTCGAGGATATCGTA
GATACAGCGCTGACAATCACCACCGTCATCCGCTACCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001833A_C01 KCC001833A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_240950.1| hypoxanthine-guanine phosphoribosyltransferase ...   101  7e-21
ref|NP_463750.1| fusion protein, N-terminal part similar to B. s...   101  7e-21
gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocy...   101  7e-21
ref|NP_469596.1| fusion protein, N-terminal part similar to B. s...   100  1e-20
ref|NP_563387.1| hypoxanthine-guanine phosphoribosyltransferase ...    97  2e-19

>ref|NP_240950.1| hypoxanthine-guanine phosphoribosyltransferase [Bacillus
           halodurans] gi|25286874|pir||D83660 hypoxanthine-guanine
           phosphoribosyltransferase hprT [imported] - Bacillus
           halodurans (strain C-125) gi|10172696|dbj|BAB03803.1|
           hypoxanthine-guanine phosphoribosyltransferase [Bacillus
           halodurans]
          Length = 179

 Score =  101 bits (251), Expect = 7e-21
 Identities = 54/113 (47%), Positives = 78/113 (68%)
 Frame = +1

Query: 172 DDMKCVLWTASDLSSRIAELGRQIATDYEGKAPLVLGVLKGSFMFYSDLVRAIEPCPRGL 351
           D+++ +L T  ++ ++I ELG+QI  +YEGK PLV+GVLKG+  F  DL + I+     L
Sbjct: 3   DEIQEILITEEEIQAKIVELGKQITEEYEGKFPLVIGVLKGAMPFMGDLTKRID---THL 59

Query: 352 TMDFIRASSYGSGTESTGDVKLKTDLKKEKVAGRHVLLVEDIVDTALTITTVI 510
            MDF+  SSYG GT S+G+VK+  DL    V GR VL+VEDI+D+ LT++ +I
Sbjct: 60  EMDFMDVSSYGKGTVSSGEVKIIKDL-DTSVEGRDVLIVEDIIDSGLTLSYLI 111

>ref|NP_463750.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria monocytogenes EGD-e]
           gi|25514803|pir||AD1102 hypoxanthine-guanine
           phosphoribosyltransferase homolog lmo0219 [imported] -
           Listeria monocytogenes (strain EGD-e)
           gi|16409584|emb|CAD00746.1| fusion protein, N-terminal
           part similar to B. subtilis YacA protein, C-terminal
           part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria monocytogenes]
          Length = 648

 Score =  101 bits (251), Expect = 7e-21
 Identities = 52/116 (44%), Positives = 82/116 (69%)
 Frame = +1

Query: 163 SYHDDMKCVLWTASDLSSRIAELGRQIATDYEGKAPLVLGVLKGSFMFYSDLVRAIEPCP 342
           S H+D++ VL +  +L  +I ELGR++ T+YEG+ PLV+GVLKG+  F +DL++ ++   
Sbjct: 469 SMHNDIQKVLISEDELQEKIRELGRELTTEYEGRNPLVVGVLKGATPFMTDLLKRVDTY- 527

Query: 343 RGLTMDFIRASSYGSGTESTGDVKLKTDLKKEKVAGRHVLLVEDIVDTALTITTVI 510
             L MDF+  SSYG+GT S+G+VK+  DL    V GR VL++EDI+D+  T++ ++
Sbjct: 528 --LEMDFMDVSSYGNGTVSSGEVKIIKDL-NASVEGRDVLVIEDIIDSGRTLSYLV 580

>gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes]
          Length = 648

 Score =  101 bits (251), Expect = 7e-21
 Identities = 52/116 (44%), Positives = 82/116 (69%)
 Frame = +1

Query: 163 SYHDDMKCVLWTASDLSSRIAELGRQIATDYEGKAPLVLGVLKGSFMFYSDLVRAIEPCP 342
           S H+D++ VL +  +L  +I ELGR++ T+YEG+ PLV+GVLKG+  F +DL++ ++   
Sbjct: 469 SMHNDIQKVLISEDELQEKIRELGRELTTEYEGRNPLVVGVLKGATPFMTDLLKRVDTY- 527

Query: 343 RGLTMDFIRASSYGSGTESTGDVKLKTDLKKEKVAGRHVLLVEDIVDTALTITTVI 510
             L MDF+  SSYG+GT S+G+VK+  DL    V GR VL++EDI+D+  T++ ++
Sbjct: 528 --LEMDFMDVSSYGNGTVSSGEVKIIKDL-NASVEGRDVLVIEDIIDSGRTLSYLV 580

>ref|NP_469596.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria innocua]
           gi|25515072|pir||AD1464 fusion protein, N-terminal part
           B. subtilis YacA protein, C-terminal part
           hypoxanthine-guanine phosphoribosyltransferase homolog
           lin0251 [imported] - Listeria innocua (strain Clip11262)
           gi|16412680|emb|CAC95484.1| fusion protein, N-terminal
           part similar to B. subtilis YacA protein, C-terminal
           part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria innocua]
          Length = 648

 Score =  100 bits (248), Expect = 1e-20
 Identities = 52/116 (44%), Positives = 81/116 (69%)
 Frame = +1

Query: 163 SYHDDMKCVLWTASDLSSRIAELGRQIATDYEGKAPLVLGVLKGSFMFYSDLVRAIEPCP 342
           S H+D++ VL +  +L  +I ELGR++  +YEG+ PLV+GVLKG+  F +DL++ I+   
Sbjct: 469 SMHNDIQKVLISEDELQEKIRELGRELTAEYEGRNPLVVGVLKGATPFMTDLLKRIDTY- 527

Query: 343 RGLTMDFIRASSYGSGTESTGDVKLKTDLKKEKVAGRHVLLVEDIVDTALTITTVI 510
             L MDF+  SSYG+GT S+G+VK+  DL    V GR VL++EDI+D+  T++ ++
Sbjct: 528 --LEMDFMDVSSYGNGTVSSGEVKIIKDL-NASVEGRDVLIIEDIIDSGRTLSYLV 580

>ref|NP_563387.1| hypoxanthine-guanine phosphoribosyltransferase [Clostridium
           perfringens] gi|18146137|dbj|BAB82177.1|
           hypoxanthine-guanine phosphoribosyltransferase
           [Clostridium perfringens str. 13]
          Length = 183

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 50/120 (41%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
 Frame = +1

Query: 160 RSYHDDMKCVLWTASDLSSRIAELGRQIATDYEGKAPLVLGVLKGSFMFYSDLVRAIE-P 336
           R   DD+K VL++   L+ R+ E+  +I+ DY GK  LV+G+LKGS +F SDL++ I  P
Sbjct: 3   RDIKDDVKKVLYSEEQLAKRVKEMAEEISKDYAGKDLLVVGILKGSVLFTSDLIKNISIP 62

Query: 337 CPRGLTMDFIRASSYGSGTESTGDVKLKTDLKKEKVAGRHVLLVEDIVDTALTITTVIRY 516
           C     +DF+  SSYG+  +++G V++  DL  + +  +HVL+VEDIVDT  T++ ++ Y
Sbjct: 63  C----EIDFMAVSSYGNSAQTSGVVRILKDLDSD-IENKHVLIVEDIVDTGTTLSYLLEY 117



EST assemble image


clone accession position
1 LC050c04_r AV622478 1 518
2 HC007d03_r AV632371 4 494
3 HCL068b12_r AV643355 8 494




Chlamydomonas reinhardtii
Kazusa DNA Research Institute