KCC001831A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001831A_C01 KCC001831A_c01
accttgtggcaacaaacaccgtggaacaatttttgcgacctGTATGGAATTGTCTTCCCG
GACGTGCCGATCCATCATTTAGCGTGTCTTCTATTGTTCGGGAGTCTGCAAGTATGGGCG
GCGAACTTGCGGAGCGCAAAGCCTCCTCAGATTCGGCGGGACCCCGCGTCGTGCAAATGC
TGGAGAGAGGCCATTCCAGCCGAGCGGCTCCTGGTAAAAGAGGATCCCAGCAACATGCCT
GCCGGAGTATGGCAGACGCGGGAGCAGCTGAAGCTAGGCACAGCGTGGGACATCAATCGG
GCGGGGGAATACGGGTAGCAGGTCTTCTCAGCGGTAGCGGCGGGGTGGCACCTTGCGTCC
TTCGCGCTGAACCTGTCTTTCTGGGGTGTCGGAGGGCATGCCTCCGGACCGCTGCTGGCC
CACCAGCCCACGCATCCGGCTCCAGATCCGGGCCGGGCGGTACGGCAACATGGACGGCGG
GCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001831A_C01 KCC001831A_c01
         (483 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_129051.2| spalt homolog [Mus musculus]                          40  0.015
gb|AAQ02501.1| fidgetin [synthetic construct]                          38  0.072
ref|NP_060556.1| fidgetin [Homo sapiens] gi|7022415|dbj|BAA91590...    38  0.072
gb|AAM50999.1| RE41430p [Drosophila melanogaster]                      38  0.072
ref|NP_572809.1| CG11138-PC [Drosophila melanogaster] gi|2283213...    38  0.072

>ref|XP_129051.2| spalt homolog [Mus musculus]
          Length = 1320

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
 Frame = -3

Query: 457 PGPDLEPDAWAGGPAAVR------RHALRHPRKTGSARRTQGATPPLPLRRPATRIPPPD 296
           PGP L+P A A G A+V+        AL+      +A    G+T P     P     P  
Sbjct: 242 PGPPLKPSASAPGTASVQLQGLTPHAALQLSAGPATASAGSGSTLPAAFDGPQHLSQPAS 301

Query: 295 *CPTLCLASAAPASAILRQACCWDPLLPGAARLEWPLSSICTTRGPAESEEALRSASSPP 116
              T C  SAAP  +    AC   P  PGA      +++  +T G A   +   +AS+PP
Sbjct: 302 GTSTPCSTSAAPPDSGAHPACSTGP-APGA------VAAASSTVGNAVQPQ---NASTPP 351

Query: 115 ILADSRTIEDTLN 77
            L     +    N
Sbjct: 352 ALGPGPLLSSASN 364

>gb|AAQ02501.1| fidgetin [synthetic construct]
          Length = 640

 Score = 37.7 bits (86), Expect = 0.072
 Identities = 42/156 (26%), Positives = 57/156 (35%), Gaps = 18/156 (11%)
 Frame = +3

Query: 48  NCLP----------GRADPSFSVSSIVRESASMGGELAERKASSDSAGPRVVQMLERGHS 197
           NC+P            A P   VS+ +  S  +   L E   SS + G   V  L  G  
Sbjct: 2   NCVPDVITASKAGVSSALPPADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLP 61

Query: 198 SRA-APGKRGSQQHACRSMADAGAAEARHSVGHQSGGGIRVA-------GLLSGSGGVAP 353
           S+  APG  GS  H+  S   A A  + H     S G ++          L+ G  G + 
Sbjct: 62  SQEYAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSN 121

Query: 354 CVLRAEPVFLGCRRACLRTAAGPPAHASGSRSGPGG 461
               + P           +A+ PP  A GS   PGG
Sbjct: 122 LSSYSYP-----------SASYPPQTAVGSGYSPGG 146

>ref|NP_060556.1| fidgetin [Homo sapiens] gi|7022415|dbj|BAA91590.1| unnamed protein
           product [Homo sapiens]
          Length = 639

 Score = 37.7 bits (86), Expect = 0.072
 Identities = 42/156 (26%), Positives = 57/156 (35%), Gaps = 18/156 (11%)
 Frame = +3

Query: 48  NCLP----------GRADPSFSVSSIVRESASMGGELAERKASSDSAGPRVVQMLERGHS 197
           NC+P            A P   VS+ +  S  +   L E   SS + G   V  L  G  
Sbjct: 2   NCVPDVITASKAGVSSALPPADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLP 61

Query: 198 SRA-APGKRGSQQHACRSMADAGAAEARHSVGHQSGGGIRVA-------GLLSGSGGVAP 353
           S+  APG  GS  H+  S   A A  + H     S G ++          L+ G  G + 
Sbjct: 62  SQEYAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSN 121

Query: 354 CVLRAEPVFLGCRRACLRTAAGPPAHASGSRSGPGG 461
               + P           +A+ PP  A GS   PGG
Sbjct: 122 LSSYSYP-----------SASYPPQTAVGSGYSPGG 146

>gb|AAM50999.1| RE41430p [Drosophila melanogaster]
          Length = 615

 Score = 37.7 bits (86), Expect = 0.072
 Identities = 41/142 (28%), Positives = 57/142 (39%)
 Frame = +3

Query: 57  PGRADPSFSVSSIVRESASMGGELAERKASSDSAGPRVVQMLERGHSSRAAPGKRGSQQH 236
           P RA PSF  S+   E  S     + R  SS  +GP   + +   +SS ++ G+R S   
Sbjct: 313 PVRA-PSFDASTFKAEHMSPA---SRRNGSSPPSGPLPPRSVHSPNSSGSSSGRRSSGSR 368

Query: 237 ACRSMADAGAAEARHSVGHQSGGGIRVAGLLSGSGGVAPCVLRAEPVFLGCRRACLRTAA 416
              S     +      VG  + G   VAG L G GG  P    A     G         +
Sbjct: 369 HVSSTTVTSS-----EVGGSNPGQAVVAGGLGGGGGGGPGSNAASGQLGG--------PS 415

Query: 417 GPPAHASGSRSGPGGTATWTAG 482
           G     S +  GPGG+A+  +G
Sbjct: 416 GGSGQLSCTSGGPGGSASSGSG 437

>ref|NP_572809.1| CG11138-PC [Drosophila melanogaster] gi|22832139|gb|AAF48175.2|
           CG11138-PC [Drosophila melanogaster]
          Length = 615

 Score = 37.7 bits (86), Expect = 0.072
 Identities = 41/142 (28%), Positives = 57/142 (39%)
 Frame = +3

Query: 57  PGRADPSFSVSSIVRESASMGGELAERKASSDSAGPRVVQMLERGHSSRAAPGKRGSQQH 236
           P RA PSF  S+   E  S     + R  SS  +GP   + +   +SS ++ G+R S   
Sbjct: 313 PVRA-PSFDASTFKAEHMSPA---SRRNGSSPPSGPLPPRSVHSPNSSGSSSGRRSSGSR 368

Query: 237 ACRSMADAGAAEARHSVGHQSGGGIRVAGLLSGSGGVAPCVLRAEPVFLGCRRACLRTAA 416
              S     +      VG  + G   VAG L G GG  P    A     G         +
Sbjct: 369 HVSSTTVTSS-----EVGGSNPGQAVVAGGLGGGGGGGPGSNAASGQLGG--------PS 415

Query: 417 GPPAHASGSRSGPGGTATWTAG 482
           G     S +  GPGG+A+  +G
Sbjct: 416 GGSGQLSCTSGGPGGSASSGSG 437



EST assemble image


clone accession position
1 LC065a07_r AV623517 1 156
2 HC007a08_r AV632347 42 483




Chlamydomonas reinhardtii
Kazusa DNA Research Institute