KCC001829A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001829A_C01 KCC001829A_c01
CACAGTCATACCTTTCGACGCACTTCATCCTTTCCCTGCTGAACACTGCACAGACACAAT
CCTTCTCGAACGTTGCTGCTGTCCTGTCCTGACTCTACCTAGCGCTGCAAACACAACGTT
ATTTGACGCACTTACGACCTGGAAACTCGCCAGCCGTGATCTGGCGCCTGTTGCGGTCTG
TTTAGGGACGGACACCGTGTACAATATGTCCGAAAAACCACCTAGAAGTCGTCTTGCGAC
GCTCCTTCTCCTTCTCGTATGTGTAGCGGGCATCTACGCTTCCTACTTGACGCAAGGCAT
CGTCAACGAGCACTTGCAGCTCAAACGGTTCGGACCGCAGCAGGAGCGATTTCTCCATCT
GGAGTCCCTCAACGGCGCCCAGGCAGTTACCTGCTTTATCTGGGCGTGGATCATCCTGCA
AGTGATGGTGATGACGGGGCGGTCGTCCAAGGCGGACATGGCGTCCTGGCACGACTACTG
GCGGGCGGGTATCACCAACTCCGTGGGCCCCGCCTGCGGCATGGTGGCGCTTAAGAAATC
ACCTACTCCGCGCAAGTGCTGGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001829A_C01 KCC001829A_c01
         (565 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_565290.1| expressed protein [Arabidopsis thaliana] gi|748...   101  6e-21
gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsi...   101  6e-21
gb|AAM64984.1| unknown [Arabidopsis thaliana]                         101  6e-21
ref|NP_563949.1| expressed protein [Arabidopsis thaliana] gi|253...    96  3e-19
gb|AAM66005.1| unknown [Arabidopsis thaliana]                          96  3e-19

>ref|NP_565290.1| expressed protein [Arabidopsis thaliana] gi|7488132|pir||T00847
           probable membrane protein At2g02810 - Arabidopsis
           thaliana gi|2947060|gb|AAC05341.1| expressed protein
           [Arabidopsis thaliana]
           gi|13877591|gb|AAK43873.1|AF370496_1 Unknown protein
           [Arabidopsis thaliana]
          Length = 332

 Score =  101 bits (252), Expect = 6e-21
 Identities = 48/108 (44%), Positives = 71/108 (65%)
 Frame = +2

Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
           +LLL +C++GI+++Y+ QG++ E L  KRFGP ++RF HL  LN AQ+V C IW++I+++
Sbjct: 11  ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70

Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
           +    G       A W  YW AGITN++GPA G+ ALK    P +  A
Sbjct: 71  LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114

>gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsis thaliana]
          Length = 332

 Score =  101 bits (252), Expect = 6e-21
 Identities = 48/108 (44%), Positives = 71/108 (65%)
 Frame = +2

Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
           +LLL +C++GI+++Y+ QG++ E L  KRFGP ++RF HL  LN AQ+V C IW++I+++
Sbjct: 11  ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70

Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
           +    G       A W  YW AGITN++GPA G+ ALK    P +  A
Sbjct: 71  LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114

>gb|AAM64984.1| unknown [Arabidopsis thaliana]
          Length = 332

 Score =  101 bits (252), Expect = 6e-21
 Identities = 48/108 (44%), Positives = 71/108 (65%)
 Frame = +2

Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
           +LLL +C++GI+++Y+ QG++ E L  KRFGP ++RF HL  LN AQ+V C IW++I+++
Sbjct: 11  ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70

Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
           +    G       A W  YW AGITN++GPA G+ ALK    P +  A
Sbjct: 71  LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114

>ref|NP_563949.1| expressed protein [Arabidopsis thaliana] gi|25346045|pir||A86278
           hypothetical protein F14L17.13 - Arabidopsis thaliana
           gi|7262678|gb|AAF43936.1|AC012188_13 Contains similarity
           to UDP-galactose transporter from Homo sapiens
           gi|2136347.  ESTs gb|AI992640, gb|W43266 come from this
           gene. [Arabidopsis thaliana]
           gi|12083308|gb|AAG48813.1|AF332450_1 unknown protein
           [Arabidopsis thaliana] gi|16649145|gb|AAL24424.1|
           Unknown protein [Arabidopsis thaliana]
           gi|21387029|gb|AAM47918.1| unknown protein [Arabidopsis
           thaliana]
          Length = 331

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 51/113 (45%), Positives = 69/113 (60%)
 Frame = +2

Query: 227 SRLATLLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWA 406
           S L  +LLL  CVAGI+A+Y+ QGI+ E L  K+FG   +RF HL  LN AQ V C +W+
Sbjct: 6   SGLRRVLLLSFCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWS 65

Query: 407 WIILQVMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
           +I++++    G       A W  YW AGITN++GPA G+ ALK    P +  A
Sbjct: 66  YIMIKLWSNGGSGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114

>gb|AAM66005.1| unknown [Arabidopsis thaliana]
          Length = 329

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 51/113 (45%), Positives = 69/113 (60%)
 Frame = +2

Query: 227 SRLATLLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWA 406
           S L  +LLL  CVAGI+A+Y+ QGI+ E L  K+FG   +RF HL  LN AQ V C +W+
Sbjct: 6   SGLRRVLLLSFCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWS 65

Query: 407 WIILQVMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
           +I++++    G       A W  YW AGITN++GPA G+ ALK    P +  A
Sbjct: 66  YIMIKLWSNGGSGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114



EST assemble image


clone accession position
1 MX220f05_r BP090219 1 561
2 MX223c11_r BP090393 10 569
3 MX220d06_r BP090201 14 589
4 MX215c09_r BP089874 15 443
5 LCL066b05_r AV629784 117 629
6 MX243f05_r BP091743 118 564
7 MX236h10_r BP091323 121 388
8 MX230h08_r BP090913 121 547
9 HC006h03_r AV632333 121 600
10 MX215g06_r BP089906 121 474
11 MX258c03_r BP092723 121 689
12 MX209d12_r BP089544 121 550
13 MX216b09_r BP089935 121 460
14 MX212e11_r BP089702 121 451
15 MX247f05_r BP091970 121 507
16 MX214d05_r BP089819 121 443
17 MX228d02_r BP090738 121 440
18 MX229c02_r BP090794 121 439
19 MX245b03_r BP091843 121 580
20 MX225g08_r BP090570 121 438
21 MX251g02_r BP092258 121 653
22 MX225e11_r BP090554 121 549
23 MX212b11_r BP089685 121 448
24 MX211d10_r BP089653 121 373
25 MX237a12_r BP091332 122 439
26 MX252f01_r BP092323 122 658
27 MX244b07_r BP091778 122 629
28 MX242d10_r BP091668 122 626
29 MX260b01_r BP092858 122 607
30 MX243b11_r BP091720 122 602
31 MX257f08_r BP092680 122 599
32 MX244d12_r BP091799 122 640
33 MX242h12_r BP091705 122 663
34 MX253h06_r BP092418 122 580
35 MX249f07_r BP092091 122 691
36 MX254b04_r BP092432 122 668
37 MX260a07_r BP092854 122 658
38 MX249h12_r BP092115 122 638
39 MX249g08_r BP092102 122 713
40 MX249a01_r BP092043 122 691
41 MX234c07_r BP091133 123 432
42 LC058a08_r AV623034 247 580




Chlamydomonas reinhardtii
Kazusa DNA Research Institute