KCC001829A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC001829A_C01 KCC001829A_c01
CACAGTCATACCTTTCGACGCACTTCATCCTTTCCCTGCTGAACACTGCACAGACACAAT
CCTTCTCGAACGTTGCTGCTGTCCTGTCCTGACTCTACCTAGCGCTGCAAACACAACGTT
ATTTGACGCACTTACGACCTGGAAACTCGCCAGCCGTGATCTGGCGCCTGTTGCGGTCTG
TTTAGGGACGGACACCGTGTACAATATGTCCGAAAAACCACCTAGAAGTCGTCTTGCGAC
GCTCCTTCTCCTTCTCGTATGTGTAGCGGGCATCTACGCTTCCTACTTGACGCAAGGCAT
CGTCAACGAGCACTTGCAGCTCAAACGGTTCGGACCGCAGCAGGAGCGATTTCTCCATCT
GGAGTCCCTCAACGGCGCCCAGGCAGTTACCTGCTTTATCTGGGCGTGGATCATCCTGCA
AGTGATGGTGATGACGGGGCGGTCGTCCAAGGCGGACATGGCGTCCTGGCACGACTACTG
GCGGGCGGGTATCACCAACTCCGTGGGCCCCGCCTGCGGCATGGTGGCGCTTAAGAAATC
ACCTACTCCGCGCAAGTGCTGGGCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001829A_C01 KCC001829A_c01
(565 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565290.1| expressed protein [Arabidopsis thaliana] gi|748... 101 6e-21
gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsi... 101 6e-21
gb|AAM64984.1| unknown [Arabidopsis thaliana] 101 6e-21
ref|NP_563949.1| expressed protein [Arabidopsis thaliana] gi|253... 96 3e-19
gb|AAM66005.1| unknown [Arabidopsis thaliana] 96 3e-19
>ref|NP_565290.1| expressed protein [Arabidopsis thaliana] gi|7488132|pir||T00847
probable membrane protein At2g02810 - Arabidopsis
thaliana gi|2947060|gb|AAC05341.1| expressed protein
[Arabidopsis thaliana]
gi|13877591|gb|AAK43873.1|AF370496_1 Unknown protein
[Arabidopsis thaliana]
Length = 332
Score = 101 bits (252), Expect = 6e-21
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +2
Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
+LLL +C++GI+++Y+ QG++ E L KRFGP ++RF HL LN AQ+V C IW++I+++
Sbjct: 11 ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70
Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
+ G A W YW AGITN++GPA G+ ALK P + A
Sbjct: 71 LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114
>gb|AAM48281.1| UDP-galactose/UDP-glucose transporter [Arabidopsis thaliana]
Length = 332
Score = 101 bits (252), Expect = 6e-21
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +2
Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
+LLL +C++GI+++Y+ QG++ E L KRFGP ++RF HL LN AQ+V C IW++I+++
Sbjct: 11 ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70
Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
+ G A W YW AGITN++GPA G+ ALK P + A
Sbjct: 71 LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114
>gb|AAM64984.1| unknown [Arabidopsis thaliana]
Length = 332
Score = 101 bits (252), Expect = 6e-21
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +2
Query: 242 LLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWAWIILQ 421
+LLL +C++GI+++Y+ QG++ E L KRFGP ++RF HL LN AQ+V C IW++I+++
Sbjct: 11 ILLLALCISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIK 70
Query: 422 VMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
+ G A W YW AGITN++GPA G+ ALK P + A
Sbjct: 71 LWSNAGNGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114
>ref|NP_563949.1| expressed protein [Arabidopsis thaliana] gi|25346045|pir||A86278
hypothetical protein F14L17.13 - Arabidopsis thaliana
gi|7262678|gb|AAF43936.1|AC012188_13 Contains similarity
to UDP-galactose transporter from Homo sapiens
gi|2136347. ESTs gb|AI992640, gb|W43266 come from this
gene. [Arabidopsis thaliana]
gi|12083308|gb|AAG48813.1|AF332450_1 unknown protein
[Arabidopsis thaliana] gi|16649145|gb|AAL24424.1|
Unknown protein [Arabidopsis thaliana]
gi|21387029|gb|AAM47918.1| unknown protein [Arabidopsis
thaliana]
Length = 331
Score = 95.9 bits (237), Expect = 3e-19
Identities = 51/113 (45%), Positives = 69/113 (60%)
Frame = +2
Query: 227 SRLATLLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWA 406
S L +LLL CVAGI+A+Y+ QGI+ E L K+FG +RF HL LN AQ V C +W+
Sbjct: 6 SGLRRVLLLSFCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWS 65
Query: 407 WIILQVMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
+I++++ G A W YW AGITN++GPA G+ ALK P + A
Sbjct: 66 YIMIKLWSNGGSGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114
>gb|AAM66005.1| unknown [Arabidopsis thaliana]
Length = 329
Score = 95.9 bits (237), Expect = 3e-19
Identities = 51/113 (45%), Positives = 69/113 (60%)
Frame = +2
Query: 227 SRLATLLLLLVCVAGIYASYLTQGIVNEHLQLKRFGPQQERFLHLESLNGAQAVTCFIWA 406
S L +LLL CVAGI+A+Y+ QGI+ E L K+FG +RF HL LN AQ V C +W+
Sbjct: 6 SGLRRVLLLSFCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWS 65
Query: 407 WIILQVMVMTGRSSKADMASWHDYWRAGITNSVGPACGMVALKKSPTPRKCWA 565
+I++++ G A W YW AGITN++GPA G+ ALK P + A
Sbjct: 66 YIMIKLWSNGGSGG----APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA 114
EST assemble image
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|
clone |
accession |
position |
1 |
MX220f05_r |
BP090219 |
1 |
561 |
2 |
MX223c11_r |
BP090393 |
10 |
569 |
3 |
MX220d06_r |
BP090201 |
14 |
589 |
4 |
MX215c09_r |
BP089874 |
15 |
443 |
5 |
LCL066b05_r |
AV629784 |
117 |
629 |
6 |
MX243f05_r |
BP091743 |
118 |
564 |
7 |
MX236h10_r |
BP091323 |
121 |
388 |
8 |
MX230h08_r |
BP090913 |
121 |
547 |
9 |
HC006h03_r |
AV632333 |
121 |
600 |
10 |
MX215g06_r |
BP089906 |
121 |
474 |
11 |
MX258c03_r |
BP092723 |
121 |
689 |
12 |
MX209d12_r |
BP089544 |
121 |
550 |
13 |
MX216b09_r |
BP089935 |
121 |
460 |
14 |
MX212e11_r |
BP089702 |
121 |
451 |
15 |
MX247f05_r |
BP091970 |
121 |
507 |
16 |
MX214d05_r |
BP089819 |
121 |
443 |
17 |
MX228d02_r |
BP090738 |
121 |
440 |
18 |
MX229c02_r |
BP090794 |
121 |
439 |
19 |
MX245b03_r |
BP091843 |
121 |
580 |
20 |
MX225g08_r |
BP090570 |
121 |
438 |
21 |
MX251g02_r |
BP092258 |
121 |
653 |
22 |
MX225e11_r |
BP090554 |
121 |
549 |
23 |
MX212b11_r |
BP089685 |
121 |
448 |
24 |
MX211d10_r |
BP089653 |
121 |
373 |
25 |
MX237a12_r |
BP091332 |
122 |
439 |
26 |
MX252f01_r |
BP092323 |
122 |
658 |
27 |
MX244b07_r |
BP091778 |
122 |
629 |
28 |
MX242d10_r |
BP091668 |
122 |
626 |
29 |
MX260b01_r |
BP092858 |
122 |
607 |
30 |
MX243b11_r |
BP091720 |
122 |
602 |
31 |
MX257f08_r |
BP092680 |
122 |
599 |
32 |
MX244d12_r |
BP091799 |
122 |
640 |
33 |
MX242h12_r |
BP091705 |
122 |
663 |
34 |
MX253h06_r |
BP092418 |
122 |
580 |
35 |
MX249f07_r |
BP092091 |
122 |
691 |
36 |
MX254b04_r |
BP092432 |
122 |
668 |
37 |
MX260a07_r |
BP092854 |
122 |
658 |
38 |
MX249h12_r |
BP092115 |
122 |
638 |
39 |
MX249g08_r |
BP092102 |
122 |
713 |
40 |
MX249a01_r |
BP092043 |
122 |
691 |
41 |
MX234c07_r |
BP091133 |
123 |
432 |
42 |
LC058a08_r |
AV623034 |
247 |
580 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute