KCC001827A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001827A_C01 KCC001827A_c01
ctCGGTTAGTCTCGTTACAGGTTCAGGCACGCGCACTTTCAACTGCATCACATCATCATC
ATCATCACATCCAGTAAGGAAGCACGCCGAACTGGCGGTATGCTTGCCATGGGCCACCCG
ACTAGGCACCGGCAGGGTGGGCCCCGAGTAGAGCCCCCCAAAGTTACGTCTCCACTGTGT
CGCCGTATCGCCGTGGTAACCGTTTGACAGAACCAGAGAAGAGGTTATCAAACTCATTCA
AGGACATGACCAGCACACGTGATTCAAGATCACCAACACCGTAACTAAGATACAAGTCTC
CTTTGGAAAGGCAAAATCCAGATATGAAAGCAACGGTTGGCATCACAGGCAATTCATGAT
TATGATAAGAAGACGGCAGATAAATCTCATCCGATACTGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001827A_C01 KCC001827A_c01
         (401 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A56235 transcription activator MafB - chicken gi|516724|dbj...    27  0.21
ref|XP_318541.1| ENSANGP00000019609 [Anopheles gambiae] gi|30174...    29  0.25
ref|NP_650022.1| CG4655-PA [Drosophila melanogaster] gi|10726444...    28  0.43
ref|NP_495586.1| putative cytoplasmic protein (2H850) [Caenorhab...    33  0.73
ref|NP_919352.1| Sp5 transcription factor-like [Danio rerio] gi|...    26  2.0

>pir||A56235 transcription activator MafB - chicken gi|516724|dbj|BAA05938.1|
           MafB [Gallus gallus]
          Length = 311

 Score = 27.3 bits (59), Expect(2) = 0.21
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 9   VSLQVQARALSTASHHHHHH 68
           VS Q+Q      A HHHHHH
Sbjct: 117 VSQQLQGFESFRAHHHHHHH 136

 Score = 26.9 bits (58), Expect(2) = 0.21
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 51  HHHHHHIQ*GSTPN 92
           HHHHHH Q   TP+
Sbjct: 160 HHHHHHHQASPTPS 173

>ref|XP_318541.1| ENSANGP00000019609 [Anopheles gambiae] gi|30174881|gb|EAA13719.2|
           ENSANGP00000019609 [Anopheles gambiae str. PEST]
          Length = 872

 Score = 29.3 bits (64), Expect(2) = 0.25
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 3   RLVSLQVQARALSTASHHHHHH 68
           RL     Q RA+S+++ HHHHH
Sbjct: 549 RLERKDTQCRAVSSSAGHHHHH 570

 Score = 24.6 bits (52), Expect(2) = 0.25
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 51  HHHHHHIQ*G 80
           HHHHHH Q G
Sbjct: 597 HHHHHHHQSG 606

>ref|NP_650022.1| CG4655-PA [Drosophila melanogaster] gi|10726444|gb|AAG22141.1|
           CG4655-PA [Drosophila melanogaster]
          Length = 503

 Score = 27.7 bits (60), Expect(2) = 0.43
 Identities = 12/29 (41%), Positives = 14/29 (47%)
 Frame = +3

Query: 51  HHHHHHIQ*GSTPNWRYACHGPPD*APAG 137
           HHHHHH Q  +  N +   H P    P G
Sbjct: 97  HHHHHHQQQHNHQNQQMQHHWPSRLGPIG 125

 Score = 25.4 bits (54), Expect(2) = 0.43
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 27  ARALSTASHHHHHH 68
           A A S   HHHHHH
Sbjct: 61  APATSPHQHHHHHH 74

>ref|NP_495586.1| putative cytoplasmic protein (2H850) [Caenorhabditis elegans]
           gi|2497038|sp|Q09338|YOFB_CAEEL HYPOTHETICAL 15.6 KD
           PROTEIN ZK1290.11 IN CHROMOSOME II
           gi|7510964|pir||T34511 hypothetical protein ZK1290.11 -
           Caenorhabditis elegans gi|687803|gb|AAB93317.1|
           Hypothetical protein ZK1290.11 [Caenorhabditis elegans]
          Length = 141

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 22/68 (32%), Positives = 34/68 (49%)
 Frame = -2

Query: 391 DEIYLPSSYHNHELPVMPTVAFISGFCLSKGDLYLSYGVGDLESRVLVMSLNEFDNLFSG 212
           D++ +   Y+N+   VM   AF  G  LSKG +    G+ DLE  +L  +L   +   + 
Sbjct: 2   DQLIITGEYYNNGSEVMDDAAFTVG--LSKGLIMHQLGMDDLEQYLLTTTLGASEERMNI 59

Query: 211 SVKRLPRR 188
           S K L R+
Sbjct: 60  SGKLLGRK 67

>ref|NP_919352.1| Sp5 transcription factor-like [Danio rerio]
           gi|31580874|dbj|BAC77541.1| hypothetical protein [Danio
           rerio]
          Length = 357

 Score = 25.8 bits (55), Expect(2) = 2.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 36  LSTASHHHHHH 68
           L + SHHHHHH
Sbjct: 98  LGSHSHHHHHH 108

 Score = 25.0 bits (53), Expect(2) = 2.0
 Identities = 15/51 (29%), Positives = 21/51 (40%), Gaps = 1/51 (1%)
 Frame = +3

Query: 51  HHHHHHIQ*GSTPNWRYACHGPPD*APAGWAPSRAPQSYVSTVSPYR-RGN 200
           HHHHHH +   TP                  P+  P +Y   +SP + +GN
Sbjct: 107 HHHHHHHELPLTP------------------PAEPPSAYSFELSPVKMQGN 139



EST assemble image


clone accession position
1 HC005h05_r AV632255 1 465
2 LC032a04_r AV621152 67 444




Chlamydomonas reinhardtii
Kazusa DNA Research Institute