KCC001826A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001826A_C01 KCC001826A_c01
gacgatttcactgagctttCTGTCGCGGGGACAAGACTTGCGTCACTGCAAACCCTTGCT
TAACCCTTGCTAGCCTCTCCTTGCCCCGACAAACAAATTCTATTTCGCATTAACATACAA
GGAAAGCAGACAAATGCTCGCAAGCCTGCGCAGCGTGCGCGTTGGTTTCGCAGCGACACG
GCCAGCCTTCGCTCGGCGAGGCGTGGCTCTCCGGCCGCGCGCAGCAGGAGAGGACCTGCC
CCCTGCCACCAGAATCACTGCTGAGGACGCCTGCAAGCTTCTGGACGTGGGCCCGAACGC
GAGCTTTGAGGAAATCCTGCAACAAAAGAACCGCAAGCTCGCGCAGGCCGATGGCGATGT
GGACAAGGTGGTGGAGATTGAGGCCGCATACGACATCCTGTTCATGCGCTCCATGAAAAA
GCGGATCACCGGCGAGCTGGAGGTCTCAACGGCGGTGCGCTACGCGGACGTGCCCACGCA
ACGCAAGGCCTCGCCCAAACCGCCGGCGATGGGCGGCATGGCGGGCATGGCCTCCAAGGT
GTCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001826A_C01 KCC001826A_c01
         (546 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179688.1| expressed protein [Arabidopsis thaliana] gi|254...    62  4e-09
ref|NP_875420.1| cyanobacteria-specific chaperone containing DNA...    52  7e-06
ref|ZP_00111766.1| COG2214: DnaJ-class molecular chaperone [Nost...    50  2e-05
ref|NP_683138.1| ORF_ID:tlr2348~hypothetical protein [Thermosyne...    50  3e-05
ref|NP_487299.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    49  6e-05

>ref|NP_179688.1| expressed protein [Arabidopsis thaliana] gi|25412002|pir||H84594
           hypothetical protein At2g20920 [imported] - Arabidopsis
           thaliana gi|4454458|gb|AAD20905.1| unknown protein
           [Arabidopsis thaliana] gi|17978972|gb|AAL47447.1|
           At2g20920/F5H14.11 [Arabidopsis thaliana]
           gi|21700805|gb|AAM70526.1| At2g20920/F5H14.11
           [Arabidopsis thaliana]
          Length = 287

 Score = 62.4 bits (150), Expect = 4e-09
 Identities = 38/93 (40%), Positives = 55/93 (58%)
 Frame = +2

Query: 194 RRGVALRPRAAGEDLPPATRITAEDACKLLDVGPNASFEEILQQKNRKLAQADGDVDKVV 373
           RR    R  +  +D PP   ++ E A K+L V   ASF+EIL+ K   LA    D + + 
Sbjct: 53  RRCAPPRASSRADDSPPFD-MSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAIS 111

Query: 374 EIEAAYDILFMRSMKKRITGELEVSTAVRYADV 472
           + EAAYD+L M+S+ +R  G++ VS  +RYADV
Sbjct: 112 QAEAAYDMLLMQSLNQRRAGKV-VSNNIRYADV 143

>ref|NP_875420.1| cyanobacteria-specific chaperone containing DNAJ domain fused to a
           membrane domain [Prochlorococcus marinus subsp. marinus
           str. CCMP1375] gi|33238006|gb|AAQ00073.1|
           cyanobacteria-specific chaperone containing DNAJ domain
           fused to a membrane domain [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 32/79 (40%), Positives = 44/79 (55%)
 Frame = +2

Query: 266 DACKLLDVGPNASFEEILQQKNRKLAQADGDVDKVVEIEAAYDILFMRSMKKRITGELEV 445
           D   LL V P++SFEEI + ++RKL+QA  D+    +IE+ YD L M S+K R  G +  
Sbjct: 17  DPYSLLGVSPDSSFEEIQEARDRKLSQAGEDLLLKAKIESCYDALLMNSLKARRLGNVS- 75

Query: 446 STAVRYADVPTQRKASPKP 502
           S AV  +        S KP
Sbjct: 76  SEAVNASQKEKNGANSGKP 94

>ref|ZP_00111766.1| COG2214: DnaJ-class molecular chaperone [Nostoc punctiforme]
          Length = 209

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +2

Query: 281 LDVGPNASFEEILQQKNRKLAQADGDVDKVVEIEAAYDILFMRSMKKRITGELEVSTAVR 460
           L V   ASF+EI   +NR   Q  GD   +  IEAAYD + M  ++ R  G+++V   +R
Sbjct: 10  LGVSEEASFDEIQDARNRLFEQHSGDAKHLEVIEAAYDAILMDRLRMRQEGKIKVPERIR 69

Query: 461 YADVPTQR--KASPKP 502
           + ++  Q   K SP P
Sbjct: 70  FPELRVQSPPKESPTP 85

>ref|NP_683138.1| ORF_ID:tlr2348~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22296076|dbj|BAC09900.1|
           ORF_ID:tlr2348~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 210

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 25/63 (39%), Positives = 40/63 (62%)
 Frame = +2

Query: 281 LDVGPNASFEEILQQKNRKLAQADGDVDKVVEIEAAYDILFMRSMKKRITGELEVSTAVR 460
           L V  +ASFE+I + ++  LA   GD  +  EIEAAYD + M  +++R  G+++V   +R
Sbjct: 16  LQVPEDASFEQIKEARDALLAAHSGDERQRTEIEAAYDAILMDRLRQRQEGKIKVPERIR 75

Query: 461 YAD 469
           YA+
Sbjct: 76  YAE 78

>ref|NP_487299.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381750|pir||AD2213
           hypothetical protein all3259 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132354|dbj|BAB74958.1|
           ORF_ID:all3259~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 208

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +2

Query: 281 LDVGPNASFEEILQQKNRKLAQADGDVDKVVEIEAAYDILFMRSMKKRITGELEVSTAVR 460
           L V  +ASF+EI   +NR   Q  GD   V  IEAAYD + M  ++ R  G+++V   +R
Sbjct: 10  LGVSEDASFDEIQDARNRLFEQYSGDSKSVEIIEAAYDAILMDRLRMRQEGKIKVPERIR 69

Query: 461 YADVPTQ 481
           + ++  Q
Sbjct: 70  FPELRVQ 76



EST assemble image


clone accession position
1 MX215a09_r BP089859 1 299
2 MXL053f09_r BP096152 20 301
3 HC005f10_r AV632240 27 546




Chlamydomonas reinhardtii
Kazusa DNA Research Institute