KCC001819A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001819A_C02 KCC001819A_c02
gcgccagcaGCCCTGAATGATGTTTGGCGGTCCTTCCAAGCCCGAGCCTCAGGGCCCCCT
GACTGCTTCTCTCGCTGCCAAGAAGCTTTTCGTTTCGTTTAAGAAGGCTGCTTGGATTTC
CTCGACCACTCTGCTCGTGCTGCTGGTGCCTCTGATCATTGAGATGGATCGCGAGGCACA
GATGATTGAGCTTGAGAAGGAGCAGCTGAGCGTGCTCACCGGTGGCCCTGCCGCCGCGAA
GGCGTAATCAGCTCGACGTGAGCATCTTTGTACTCGCTCGCTGGTTTAGGAGCCGGAGCC
GCAGCGCCCCGGTCGCTCATTAGGACTTTCGGACGTGAAAGCTGGTCGCTCAGCCAGGAT
CGGGAGGCAGGAAGGATGTCGTCGGCAAACCCGCGCACGCTTGCCGGGCCAATCGTGCAG
CTCTTCCGCGACGTTATGAAGCTGCACCGTGAGCGGCTGCCCCCGCCTATGCGGGACCTG
GGGGATAGCTACGCTCGCGCGGAGTTCCGCAGCCACCTGCGCGGCAAGACGACCATGGAG
CAGTGGAAGCAGTTTGTGCGGGAGTGGCAGGTCTACCTCGCCACGCTGCGTGGCGATGAG
CAGGCGGCCGCCAGCGCGGACGCAAACGTGGCGCGTGTGTTTGAGCTGCTGTCTGACGAC
CAGCGCAAGCGCATGGACCAGCTGCAGCAGGAACTCAACAGCCGCACCGGCGGAGGCGGA
GGAGACAGCGACGGTGGCGACGCCGGGCGCGGCCCTCACCAGTGAGGGGCGCGGCGGAGC
GGTGGAGTGCGGGCAGCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001819A_C02 KCC001819A_c02
         (800 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_331647.1| predicted protein [Neurospora crassa] gi|289264...    68  2e-10
ref|NP_199210.1| expressed protein [Arabidopsis thaliana] gi|242...    62  1e-08
emb|CAC85376.1| hypothetical protein [Kluyveromyces lactis]            55  2e-06
ref|NP_563699.1| expressed protein [Arabidopsis thaliana] gi|748...    52  1e-05
ref|NP_064571.1| ACN9 homolog [Homo sapiens] gi|9295170|gb|AAF86...    50  4e-05

>ref|XP_331647.1| predicted protein [Neurospora crassa] gi|28926481|gb|EAA35454.1|
           predicted protein [Neurospora crassa]
          Length = 148

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 40/115 (34%), Positives = 61/115 (52%), Gaps = 1/115 (0%)
 Frame = +1

Query: 409 PIVQLFRDVMKLHRERLPPPMRDLGDSYARAEFRSHLRGKTTMEQWKQFVREWQVYLATL 588
           P + L+R +++ HR+ LP  MR LGD Y +AEFR+H R          F+ EWQ+Y   +
Sbjct: 35  PPIYLYRRLLRAHRKYLPREMRLLGDEYVKAEFRAH-RSVDNPAHLIGFLTEWQLYAQKI 93

Query: 589 RGDEQAAASADANVARVFELLSDDQRKRMDQLQQELNSR-TGGGGGDSDGGDAGR 750
            G+       D       E +SD+Q  ++ +L Q +  R T G   D DGG++G+
Sbjct: 94  EGNSWVGEKLDKGKV---EKMSDEQIGQLYELMQAIQKRGTEGDLEDGDGGESGQ 145

>ref|NP_199210.1| expressed protein [Arabidopsis thaliana]
           gi|24212685|sp|Q9FNC9|OM22_ARATH Mitochondrial import
           receptor subunit TOM22 homolog (Translocase of outer
           membrane 22 kDa subunit homolog)
           gi|9758556|dbj|BAB09057.1|
           gene_id:MRH10.8~pir||T00965~similar to unknown protein
           [Arabidopsis thaliana] gi|15529292|gb|AAK97740.1|
           AT5g43970/MRH10_8 [Arabidopsis thaliana]
           gi|16974415|gb|AAL31133.1| AT5g43970/MRH10_8
           [Arabidopsis thaliana] gi|21595230|gb|AAM66083.1|
           unknown [Arabidopsis thaliana]
          Length = 99

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = +2

Query: 77  AKKLFVSFKKAAWISSTTLLVLLVPLIIEMDREAQMIELEKEQLSVLTGGPA 232
           +KKL  S  KAAWI+ TT L+L+VPLIIEMDREAQ+ E+E +Q S+L   P+
Sbjct: 42  SKKLLRSTGKAAWIAGTTFLILVVPLIIEMDREAQINEIELQQASLLGAPPS 93

>emb|CAC85376.1| hypothetical protein [Kluyveromyces lactis]
          Length = 128

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 39/126 (30%), Positives = 62/126 (48%), Gaps = 2/126 (1%)
 Frame = +1

Query: 346 SLSQDREAGRMSSANPRTLAGPIVQLFRDVMKLHRERLPPPMRDLGDSYARAEFRSHLRG 525
           ++ Q   AGR+ S  P     P +QL+R +++ HR  LP   R+LGD Y + EF+ H + 
Sbjct: 10  AVKQTTRAGRLGSRKPHKPLLPPLQLYRRILREHR-NLPTMQRELGDQYVKNEFKLH-KS 67

Query: 526 KTTMEQWKQFVREWQVYLATL-RGD-EQAAASADANVARVFELLSDDQRKRMDQLQQELN 699
                    F+  WQ YL  + RG+ E+   S D     + E +S +Q  ++ +L +E  
Sbjct: 68  TDNPLYIVGFLASWQDYLHMITRGEWEEGTLSTD-----LLEKMSPEQVTQLYELMKEAE 122

Query: 700 SRTGGG 717
               GG
Sbjct: 123 QLKSGG 128

>ref|NP_563699.1| expressed protein [Arabidopsis thaliana] gi|7485870|pir||T00965
           hypothetical protein F20D22.15 - Arabidopsis thaliana
           gi|3142296|gb|AAC16747.1| Contains similarity to
           hypothetical mitochondrial import receptor subunit
           gb|Z98597 from S. pombe.  ESTs gb|T45575 and gb|Z26435
           and gb|AA394576 come from this gene. [Arabidopsis
           thaliana] gi|21592382|gb|AAM64333.1| unknown
           [Arabidopsis thaliana]
          Length = 94

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 26/58 (44%), Positives = 39/58 (66%)
 Frame = +2

Query: 65  ASLAAKKLFVSFKKAAWISSTTLLVLLVPLIIEMDREAQMIELEKEQLSVLTGGPAAA 238
           A   +KKL  S  KAAWI+ TT L+L VPLI+E++++ ++ E++ EQ S+L   P  A
Sbjct: 35  AVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDHRLGEIDFEQASLLGTPPVGA 92

>ref|NP_064571.1| ACN9 homolog [Homo sapiens] gi|9295170|gb|AAF86869.1|AF201933_1
           DC11 [Homo sapiens] gi|18088313|gb|AAH20621.1| DC11
           protein [Homo sapiens] gi|18605545|gb|AAH22858.1| DC11
           protein [Homo sapiens]
          Length = 125

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
 Frame = +1

Query: 421 LFRDVMKLHRERLPPPMRDLGDSYARAEFRSHLRGKTT-MEQWKQFVREWQVYLATL--R 591
           L++ V++LHR  LPP ++ LGD Y + EFR H   KT   ++ ++F++EW+VY   L  +
Sbjct: 12  LYKRVLQLHRV-LPPDLKSLGDQYVKDEFRRH---KTVGSDEAQRFLQEWEVYATALLQQ 67

Query: 592 GDEQAAASADANVARVF---ELLSDDQRKRMDQLQQELNSRT 708
            +E    S        F   E L+D + +++ QLQ+ +   T
Sbjct: 68  ANENRQNSTGKACFGTFLPEEKLNDFRDEQIGQLQELMQEAT 109



EST assemble image


clone accession position
1 LCL023c03_r AV627231 1 505
2 HC055e05_r AV636127 10 446
3 HC050a05_r AV635719 13 446
4 HC093d01_r AV638977 20 518
5 HC098f10_r AV639384 21 533
6 HC035c12_r AV634591 26 502
7 HC059c07_r AV636423 26 531
8 HCL049b03_r AV642291 33 545
9 MX043d10_r BP087779 189 662
10 HC006e11_r AV632307 328 801




Chlamydomonas reinhardtii
Kazusa DNA Research Institute