KCC001818A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001818A_C01 KCC001818A_c01
cacacactgacatacctgaaacctgcgaacgatgccttccacgcagttcctcggcgcctc
gacgctgcttctatttggatTGCGCGCCGTCATGTCTTCCGATGACTATATCAAGCGTGG
GGACCTGCCAACCAGCAAATGGAGCGGGCGGGTGACGTTGCGGGTGGATTCTGCGATGGC
GGTTCCGTTGGACGTCGTTATTACGTATCCCAGCAGCGGCGCAGCGGCCTACCCTGTTCT
TGTAATGTATAATGGCTTCCAGGCCAAGGCCCCCTGGTACCGTGGCATCGTGGACCACGT
GTCCTCCTGGGGCTACACGGTGGTGCAGTACACCAATGGGGGGCTCTTCCCCATCGTGGT
GGACCGTGTCGAGCTCACATACCTGGAGCCTCTGCTGACGTGGCTCGAGACCCAGTCCGC
GGACGCCAAGAGCCCCCTCTACGGCCGCGCTGACGTGTCGCGTCTGGGCACCATGGGCCA
CAGCCGCGGAGGCAAGCTGGCAGCACTGCAGTTCGCGGGCCGTACGGACGTGTCTGGCTG
CGTCCTGTTTGACCCCGTGGACGGCTCCCCGATGACTCCCGAGTCCGCCGACTACCCCTC
CGCCACCAAGGCACTGGCGGCGGCGGGCCGCAGTGCGGGTCTGGTGGGCGCCGCCATCAC
CGGCAGCTGCAATCCCGTGGGACAGAATTACCCCAAGTTCTGGGGCGCTCTGGCGCCCGG
CT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001818A_C01 KCC001818A_c01
         (722 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP53795.1| putative submergence induced protein 2 [Oryza sat...    62  1e-08
gb|AAN51933.1|AF337544_1 chlorophyllase 1 [Brassica oleracea]          58  2e-07
sp|Q9MV14|CLH1_CITSI Chlorophyllase 1, chloroplast precursor (Ch...    56  6e-07
ref|NP_564094.1| coronatine-induced protein 1 (CORI1) [Arabidops...    54  2e-06
sp|Q94LX1|CLH1_CITUN Chlorophyllase 1, chloroplast precursor (Ch...    54  3e-06

>gb|AAP53795.1| putative submergence induced protein 2 [Oryza sativa (japonica
           cultivar-group)]
          Length = 384

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 62/221 (28%), Positives = 89/221 (40%), Gaps = 42/221 (19%)
 Frame = +2

Query: 179 AVPLDVVITYPSSGAAAYPVLVMYNGFQAKAPWYRGIVDHVSSWGYTVVQ---------- 328
           A P  +++  P   A  YPV+V  +G+ A   +Y  + +HV+S G+ VV           
Sbjct: 75  APPKPLLVAAPCD-AGVYPVVVFLHGYLAYNSFYSQLFEHVASHGFVVVGPQLFLGCELI 133

Query: 329 ----------YTNGGLFPIVVDRVELTYLEPLLTWLETQSADAKSPLYGRADVSRLGTMG 478
                     YT  G  P   D  E+     ++ WL      +K P   RAD +++   G
Sbjct: 134 LSNNFDAKMLYTMSG--PDTTD--EINSAAAVINWLAAGGLTSKLPPNVRADATKISISG 189

Query: 479 HSRGGKLA-ALQF----------AGRTDVSGCVLFDPVD----GSPMTPESADYPSATKA 613
           HSRGGK+A AL            AG   ++  V  DPVD    G    P    Y  A   
Sbjct: 190 HSRGGKVAFALALGHANVSLRGGAGGATIAALVAVDPVDGFAAGKQTPPPILTYGGANSL 249

Query: 614 LAAAG---RSAGLVG----AAITGSCNPVGQNYPKFWGALA 715
              A       GL G    A +  +C P G ++ +F+G  A
Sbjct: 250 RVPAPVMVIGTGLGGLARAAPLLPACAPPGVSHGEFYGECA 290

>gb|AAN51933.1|AF337544_1 chlorophyllase 1 [Brassica oleracea]
          Length = 324

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 66/237 (27%), Positives = 98/237 (40%), Gaps = 15/237 (6%)
 Frame = +2

Query: 38  STQFLGASTLLLFGLRAVMSSDDYIKRGDLPTSKWSGRVTLRVDSAMAVPLDVVITYPSS 217
           S  F  A+T L F L            G LPT+      +       A P  V+IT P+ 
Sbjct: 7   SETFFSAATPLAFEL------------GSLPTTVIPADPS--ATDLTAPPKPVIITSPTV 52

Query: 218 GAAAYPVLVMYNGFQAKAPWYRGIVDHVSSWGYTVVQYTNGGLFPIVVDRVELTYLEPLL 397
            A  YPV++ ++GF  +  +Y  +++HV+S GY VV      + P    +VE+     ++
Sbjct: 53  -AGTYPVVLFFHGFYLRNYFYSDVINHVASHGYIVVAPQLCKILP-PGGQVEVDDAGKVI 110

Query: 398 TWLETQSADAKSPLYGRADVSRLGTMGHSRGGKLA---ALQFAGRTD----VSGCVLFDP 556
            W  +++  A  P    A+ +    +GHSRGGK A   AL  A   D     S  V  DP
Sbjct: 111 NW-TSKNLKAHLPSSVNANGNYTALVGHSRGGKTAFAVALGHAATLDPSIKFSALVGIDP 169

Query: 557 VDGSP----MTPESADYPSAT----KALAAAGRSAGLVGAAITGSCNPVGQNYPKFW 703
           V G        PE   Y   +      +A  G   G     +   C P   N+ +F+
Sbjct: 170 VAGISKCIRTDPEILTYKPESFDLDMPVAVIGTGLGPKSNMLMPPCAPAEVNHEEFY 226

>sp|Q9MV14|CLH1_CITSI Chlorophyllase 1, chloroplast precursor (Chlorophyll-chlorophyllido
           hydrolase 1) (Chlase 1)
           gi|7328567|gb|AAF59834.1|AF160869_1 chlorophyllase
           [Citrus sinensis]
          Length = 329

 Score = 55.8 bits (133), Expect = 6e-07
 Identities = 53/192 (27%), Positives = 79/192 (40%), Gaps = 7/192 (3%)
 Frame = +2

Query: 149 RVTLRVDSAMAVP--LDVVITYPSSGAAAYPVLVMYNGFQAKAPWYRGIVDHVSSWGYTV 322
           R+TL   S  + P    ++I  P+ G   + V++  +G       Y  I DH++S G+ V
Sbjct: 36  RITLETSSPSSPPPPKPLIIVTPA-GKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIV 94

Query: 323 VQYTNGGLFPIVVDRVELTYLEPLLTWLETQSADAKSPLYGRADVSRLGTMGHSRGGKLA 502
           V        P      EL     +  WL  Q      P    A+VS +  MGHSRGG+  
Sbjct: 95  VAPQLYTSIPPPSATNELNSAAEVAEWLP-QGLQQNLPENTEANVSLVAVMGHSRGGQ-T 152

Query: 503 ALQFAGRTDVSGCVLFDPVDGSPMT----PESADYPSATKALAAAGRSAGLVGAA-ITGS 667
           A   + R      +  DPV G+  T    P    + S   ++       GL G A    +
Sbjct: 153 AFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITA 212

Query: 668 CNPVGQNYPKFW 703
           C P G N+ +F+
Sbjct: 213 CAPEGANHEEFF 224

>ref|NP_564094.1| coronatine-induced protein 1 (CORI1) [Arabidopsis thaliana]
           gi|30912637|sp|O22527|CLH1_ARATH Chlorophyllase 1
           (AtCLH1) (Chlorophyll-chlorophyllido hydrolase 1)
           (Chlase 1) (Coronatine-induced protein 1) (CORI1)
           gi|25402901|pir||E86329 coronatine-induced protein 1
           [imported] - Arabidopsis thaliana
           gi|2460203|gb|AAC13947.1| coronatine-induced protein 1
           [Arabidopsis thaliana]
           gi|10086487|gb|AAG12547.1|AC007797_7 coronatine-induced
           protein 1 [Arabidopsis thaliana]
           gi|20466698|gb|AAM20666.1| unknown protein [Arabidopsis
           thaliana] gi|23198202|gb|AAN15628.1| unknown protein
           [Arabidopsis thaliana]
          Length = 324

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 60/215 (27%), Positives = 93/215 (42%), Gaps = 20/215 (9%)
 Frame = +2

Query: 119 GDLPTSKWSGRVTLRVDSAMAVPLDVVITYPSSGAAAYPVLVMYNGFQAKAPWYRGIVDH 298
           G LPT++    V    + + A P  V IT P+  A  YPV++ ++GF  +  +Y  +++H
Sbjct: 22  GSLPTTEIP--VDPVENDSTAPPKPVRITCPTV-AGTYPVVLFFHGFYLRNYFYSDVLNH 78

Query: 299 VSSWGYTVVQYTNGGLFPIVVDRVELTYLEPLLTWLETQSADAKSPLYGRADVSRLGTMG 478
           ++S GY +V      L P    +VE+     ++ W  +++  A  P    A+      +G
Sbjct: 79  IASHGYILVAPQLCKLLP-PGGQVEVDDAGSVINW-ASENLKAHLPTSVNANGKYTSLVG 136

Query: 479 HSRGGKLA---ALQFAGRTD----VSGCVLFDPVDGS-----------PMTPES--ADYP 598
           HSRGGK A   AL  A   D     S  +  DPV G+              PES   D P
Sbjct: 137 HSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAGTNKYIRTDPHILTYKPESFELDIP 196

Query: 599 SATKALAAAGRSAGLVGAAITGSCNPVGQNYPKFW 703
                +A  G   G     +   C P   N+ +F+
Sbjct: 197 -----VAVVGTGLGPKWNNVMPPCAPTDLNHEEFY 226

>sp|Q94LX1|CLH1_CITUN Chlorophyllase 1, chloroplast precursor (Chlorophyll-chlorophyllido
           hydrolase 1) (Chlase 1) gi|13928589|dbj|BAB47176.1|
           chlorophyllase [Citrus unshiu]
          Length = 329

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 52/193 (26%), Positives = 78/193 (39%), Gaps = 8/193 (4%)
 Frame = +2

Query: 149 RVTLRVDSAMAVPLD---VVITYPSSGAAAYPVLVMYNGFQAKAPWYRGIVDHVSSWGYT 319
           R+TL   S  + P     +++T    G   + V++  +G       Y  I DH++S G+ 
Sbjct: 36  RITLETSSPSSPPPPKPLIIVTPAEKGT--FNVILFLHGTSLSNKSYSKIFDHIASHGFI 93

Query: 320 VVQYTNGGLFPIVVDRVELTYLEPLLTWLETQSADAKSPLYGRADVSRLGTMGHSRGGKL 499
           VV        P      EL     +  WL  Q      P    A+VS +  MGHSRGG+ 
Sbjct: 94  VVAPQLYTSIPPPSATNELNSAAEVAEWLP-QGLQQNLPENTEANVSLVAVMGHSRGGQ- 151

Query: 500 AALQFAGRTDVSGCVLFDPVDGSPMT----PESADYPSATKALAAAGRSAGLVGAA-ITG 664
            A   + R      +  DPV G+  T    P    + S   ++       GL G A    
Sbjct: 152 TAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCIT 211

Query: 665 SCNPVGQNYPKFW 703
           +C P G N+ +F+
Sbjct: 212 ACAPEGANHEEFF 224



EST assemble image


clone accession position
1 MX216c08_r BP089944 1 337
2 HC004d01_r AV632132 219 722




Chlamydomonas reinhardtii
Kazusa DNA Research Institute