KCC001816A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001816A_C01 KCC001816A_c01
tgtccccttcatagttgCAGTATTCGTGTAATCGTTTGGCTACACAGCCAAAACACCTAG
AACAATACACAAAGTTGGAGGCAACACCCATTTTCTCGGCACCTTTAATTACTTTCCGAC
TCTTACCAAGTCACCATGGCAGCTAAGATTAAGGAAGGACTGAGAGACATCAAGCAGGGT
GTCCTTGAGAAACTCACCGGGCCTAAATATGCGGACAACCTGCTCGGAGAGAGCTTGCAG
GATCAGCTGCGTAAGGCAACTGCGAAGGAGCTCGTCGGGCCTAACGAGGAGCTCAACTCC
CAGGTCGTCGACACCATCAACCAAGACATCGCAAACGGGAAGGACAGCAAGGAGATTGTC
TCGCTGCTGAAGAAGCGACTGCGCACCGACAACCCGCACAAGCAGTGGCTGGCTGTTCAG
CTGGTGGGTCGTGTGCTGCGGGACTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001816A_C01 KCC001816A_c01
         (446 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|231976...    45  2e-04
dbj|BAB61260.1| P0439E11.10 [Oryza sativa (japonica cultivar-gro...    43  9e-04
dbj|BAA94771.1| unnamed protein product [Oryza sativa (japonica ...    40  0.006
gb|AAL58181.1|AC027037_3 hepatocyte growth factor-regulated tyro...    38  0.027
ref|NP_177823.2| expressed protein [Arabidopsis thaliana] gi|342...    37  0.047

>gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|23197650|gb|AAN15352.1|
           putative protein [Arabidopsis thaliana]
          Length = 675

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 22/66 (33%), Positives = 42/66 (63%)
 Frame = +1

Query: 247 LRKATAKELVGPNEELNSQVVDTINQDIANGKDSKEIVSLLKKRLRTDNPHKQWLAVQLV 426
           + +AT++ L+GP+  +N ++ D +N D A  KD   +V  +KKR+ + NP  Q LA+ L+
Sbjct: 6   VERATSEMLIGPDWAMNLEICDMLNSDPAQAKD---VVKGIKKRIGSRNPKAQLLALTLL 62

Query: 427 GRVLRD 444
             ++++
Sbjct: 63  ETIVKN 68

>dbj|BAB61260.1| P0439E11.10 [Oryza sativa (japonica cultivar-group)]
          Length = 431

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 22/67 (32%), Positives = 42/67 (61%)
 Frame = +1

Query: 244 QLRKATAKELVGPNEELNSQVVDTINQDIANGKDSKEIVSLLKKRLRTDNPHKQWLAVQL 423
           ++ KAT+  L+GP+  +N ++ D IN D+   KD   +V  +KKRL+  +P  Q+ A+ L
Sbjct: 21  RVEKATSHLLMGPDWAVNLEICDIINADVWQTKD---VVKAVKKRLQNKDPKVQFYALTL 77

Query: 424 VGRVLRD 444
           +  ++++
Sbjct: 78  LETMMKN 84

>dbj|BAA94771.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|17385749|dbj|BAB78689.1| P0452F10.26 [Oryza sativa
           (japonica cultivar-group)]
          Length = 507

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 22/64 (34%), Positives = 36/64 (55%)
 Frame = +1

Query: 253 KATAKELVGPNEELNSQVVDTINQDIANGKDSKEIVSLLKKRLRTDNPHKQWLAVQLVGR 432
           +AT+  L+GP+   N ++ D  N+D    KD   +V  LKKR+   NP  Q LA+ L+  
Sbjct: 8   RATSDMLIGPDWAKNMEICDICNRDPGQSKD---VVKALKKRIGHKNPKVQILALTLLET 64

Query: 433 VLRD 444
            +++
Sbjct: 65  AIKN 68

>gb|AAL58181.1|AC027037_3 hepatocyte growth factor-regulated tyrosine kinase substrate-like
           protein [Oryza sativa (japonica cultivar-group)]
           gi|31433682|gb|AAP55166.1| hepatocyte growth
           factor-regulated tyrosine kinase substrate-like protein
           [Oryza sativa (japonica cultivar-group)]
          Length = 387

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 25/103 (24%), Positives = 51/103 (49%)
 Frame = +1

Query: 136 MAAKIKEGLRDIKQGVLEKLTGPKYADNLLGESLQDQLRKATAKELVGPNEELNSQVVDT 315
           ++ K+  G+ ++   + E   G   AD ++ E        AT + +  P+   N ++ D 
Sbjct: 23  VSRKMSAGVSNMSFKMKEFFQGQNMADKIVDE--------ATLETMDAPDWATNLEICDM 74

Query: 316 INQDIANGKDSKEIVSLLKKRLRTDNPHKQWLAVQLVGRVLRD 444
           +N    N   S E++  +K+R+   NP  Q+LA+ L+  V+++
Sbjct: 75  VNTGNVN---SIELIRAIKRRIMLKNPRVQYLALVLLETVVKN 114

>ref|NP_177823.2| expressed protein [Arabidopsis thaliana] gi|34222074|gb|AAQ62873.1|
           At1g76970 [Arabidopsis thaliana]
          Length = 446

 Score = 37.4 bits (85), Expect = 0.047
 Identities = 22/55 (40%), Positives = 32/55 (58%)
 Frame = +1

Query: 253 KATAKELVGPNEELNSQVVDTINQDIANGKDSKEIVSLLKKRLRTDNPHKQWLAV 417
           +AT   L+GP+  +N ++ D IN D      +KE V +LKKRL + N   Q LA+
Sbjct: 11  RATNDMLIGPDWAINIELCDLINMD---PSQAKEAVKVLKKRLGSKNSKVQILAL 62



EST assemble image


clone accession position
1 LCL092g11_r AV631371 1 435
2 HC004a11_r AV632110 18 446




Chlamydomonas reinhardtii
Kazusa DNA Research Institute