KCC001808A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001808A_C01 KCC001808A_c01
cattactcgacagGTTATCTGTATTGTACTTTTCAGACACTATCAATATCATGCTTGCCT
CTCGCTCTGTCCAGCGTGTTTCAGTGACCCGGCGCCAGTCGCTGGTGGTGACTTGCTCCG
GAAACGGCTATTCGACGGGTGTTTTTCACGAAGGCCAGAAGGTCAAGGTGATCGCTTCCG
TTAAGGTCTTCCATGCGCCGAAGCACCACGAAGGCATGGACCTGAAGGGAATGGAGGGCA
CCGTGACAAAGGACGTCACCCACTTTAAGGGCAAGACGCTCTCAGCGACGCTTCCCTACC
AGGTTCAGTTCCTGGTGCCGGGAGAGAGCGACACGGATAAGCACATGAAGTTCTCGGCTC
ACCTGGCTGAGGACGAGATTGCTGCGGTGTAAAGTTAGAGGCGTGGCGATAGGCGCACTG
CTTCAACGGAATAAGCTACTCGGCAGGCAAGCGCTTTCCCAGTTGGGCCGCGGTGTTGAT
GGTATTGAATCGGACGCACACTTCCTGCACCAGGTTGCTGTGGACGGGTTGACCGCGGCG
GTGGGTGGCTCCGGTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001808A_C01 KCC001808A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC39619.1| subunit A of ferredoxin-thioredoxin-reductase [S...    68  7e-11
emb|CAD41196.1| OSJNBa0074L08.7 [Oryza sativa (japonica cultivar...    58  8e-08
ref|NP_486509.1| ferredoxin-thioredoxin reductase variable subun...    57  2e-07
ref|ZP_00110201.1| hypothetical protein [Nostoc punctiforme]           57  2e-07
ref|NP_197735.1| expressed protein [Arabidopsis thaliana] gi|975...    56  3e-07

>emb|CAC39619.1| subunit A of ferredoxin-thioredoxin-reductase [Solanum tuberosum]
          Length = 171

 Score = 68.2 bits (165), Expect = 7e-11
 Identities = 38/75 (50%), Positives = 47/75 (62%)
 Frame = +3

Query: 153 GQKVKVIASVKVFHAPKHHEGMDLKGMEGTVTKDVTHFKGKTLSATLPYQVQFLVPGESD 332
           G KV+V   +KV+H PK  E +DL G  GTV + V   KGK +SA LPY+VQF+V     
Sbjct: 93  GSKVRVTVPLKVYHEPKVPE-LDLDGRIGTVKQYVAVHKGKQISANLPYKVQFVVDDLEG 151

Query: 333 TDKHMKFSAHLAEDE 377
               +KFSAHL EDE
Sbjct: 152 RSTPVKFSAHLKEDE 166

>emb|CAD41196.1| OSJNBa0074L08.7 [Oryza sativa (japonica cultivar-group)]
          Length = 153

 Score = 58.2 bits (139), Expect = 8e-08
 Identities = 33/79 (41%), Positives = 51/79 (63%)
 Frame = +3

Query: 153 GQKVKVIASVKVFHAPKHHEGMDLKGMEGTVTKDVTHFKGKTLSATLPYQVQFLVPGESD 332
           G++V+V A V+V H  K  + +D+ GMEG V + V  +KGK ++A LP++V+F +  +  
Sbjct: 74  GKRVRVTAPVRVHHVSKAPD-LDICGMEGVVKQYVGIWKGKRITANLPFKVEFELRVDGQ 132

Query: 333 TDKHMKFSAHLAEDEIAAV 389
            DK ++F AHL EDE   V
Sbjct: 133 -DKPVRFFAHLREDEFELV 150

>ref|NP_486509.1| ferredoxin-thioredoxin reductase variable subunit [Nostoc sp. PCC
           7120] gi|25285433|pir||AF2114 ferredoxin-thioredoxin
           reductase variable chain [imported] - Nostoc sp. (strain
           PCC 7120) gi|17131561|dbj|BAB74168.1|
           ferredoxin-thioredoxin reductase variable subunit
           [Nostoc sp. PCC 7120]
          Length = 73

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 31/80 (38%), Positives = 46/80 (56%), Gaps = 1/80 (1%)
 Frame = +3

Query: 153 GQKVKVIASVKVFHAPKHH-EGMDLKGMEGTVTKDVTHFKGKTLSATLPYQVQFLVPGES 329
           G +V V  SV V+H P+H  +  DLKG EG + + VT ++G+ +SA LP+ +QF      
Sbjct: 4   GDRVCVKESVVVYHHPEHRGKAFDLKGSEGEIVEIVTQWQGRPVSANLPFLIQF------ 57

Query: 330 DTDKHMKFSAHLAEDEIAAV 389
                 KF AHL E+E+  +
Sbjct: 58  ----SKKFKAHLRENELEVI 73

>ref|ZP_00110201.1| hypothetical protein [Nostoc punctiforme]
          Length = 84

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 141 VFHEGQKVKVIASVKVFHAPKH-HEGMDLKGMEGTVTKDVTHFKGKTLSATLPYQVQFLV 317
           V   G +V+V  SV V+H P+H ++  D+KG+EG V    T ++G+ +SA LP  VQF  
Sbjct: 11  VMKVGDRVRVKDSVVVYHHPEHRNQAFDIKGIEGDVVNIATQWQGRPVSANLPVVVQF-- 68

Query: 318 PGESDTDKHMKFSAHLAEDEIAAV 389
                     KF AHL E+E+  +
Sbjct: 69  --------SKKFKAHLRENELEVI 84

>ref|NP_197735.1| expressed protein [Arabidopsis thaliana] gi|9759082|dbj|BAB09560.1|
           contains similarity to ferredoxin-thioredoxin reductase
           variable chain~gene_id:K19M13.7 [Arabidopsis thaliana]
          Length = 182

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 32/75 (42%), Positives = 48/75 (63%)
 Frame = +3

Query: 153 GQKVKVIASVKVFHAPKHHEGMDLKGMEGTVTKDVTHFKGKTLSATLPYQVQFLVPGESD 332
           G +V+V A +KV+H  +  E +DL+GMEG +   V  +KGK +SA LPY+++F    E +
Sbjct: 105 GSRVRVTAPLKVYHVNRVPE-VDLEGMEGKLKDYVAVWKGKRISANLPYKIEFF--KEIE 161

Query: 333 TDKHMKFSAHLAEDE 377
               +KF +HL EDE
Sbjct: 162 GRGLVKFVSHLKEDE 176



EST assemble image


clone accession position
1 LC042d12_r AV621907 1 520
2 LCL007d06_r AV626346 14 197
3 MXL071g09_r BP097207 29 321
4 LC071g02_r AV624011 32 550
5 MXL073b11_r BP097296 34 418
6 HC003a04_r AV632026 34 544
7 HC087d06_r AV638520 36 450
8 HC023a11_r AV633621 54 538
9 HC086g11_r AV638473 57 566




Chlamydomonas reinhardtii
Kazusa DNA Research Institute