Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001807A_C01 KCC001807A_c01
(471 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC07029.1| hypothetical protein [Oryza sativa (japonica cul... 39 0.040
dbj|BAC85685.1| unnamed protein product [Homo sapiens] 35 0.57
gb|AAF63242.1|AF183571_1 homeobox transcription factor Six3 [Xen... 33 1.3
ref|NP_291061.1| protocadherin gamma subfamily C, 5 [Mus musculu... 33 1.3
gb|AAM93563.1| protocadherin C5 gamma C-I [Mus musculus] 33 1.3
>dbj|BAC07029.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 38.5 bits (88), Expect = 0.040
Identities = 25/68 (36%), Positives = 31/68 (44%), Gaps = 9/68 (13%)
Frame = +2
Query: 293 WPRHKRLKT---RRTGPRPRAPSATPSPPRTRV*LSTSKHKRMPRTGRARYR------PR 445
W RH+R + RR +P+ TPSP R +TS R R RAR R PR
Sbjct: 215 WRRHRRSRAEPHRRAADAAESPTTTPSPRHHRPAAATSPPSRHCRHARARARWSQERWPR 274
Query: 446 IGHPATQP 469
HP+ P
Sbjct: 275 RRHPSASP 282
>dbj|BAC85685.1| unnamed protein product [Homo sapiens]
Length = 784
Score = 34.7 bits (78), Expect = 0.57
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +2
Query: 299 RHKRLKTRRTGPRPRAPSATPSPPRTRV*LSTSKHKRMPRTGRARYRPRIGHPATQP 469
R RL+T+ T PRP AP + P+P +T R P + RPRI P TQP
Sbjct: 197 RRPRLRTKTT-PRPEAPESKPAPKQT---------PRAPPKPKTSPRPRI--PQTQP 241
>gb|AAF63242.1|AF183571_1 homeobox transcription factor Six3 [Xenopus laevis]
Length = 291
Score = 33.5 bits (75), Expect = 1.3
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = +1
Query: 193 PYTSYNKQDEV-------PTLIGNWVEERELKELTGVTRNLAASQALKDTSDGTSPTRSL 351
PY + +K+ E+ PT +GNW + R ++ R AA L+ S G S RSL
Sbjct: 187 PYPNPSKKRELAQATGLTPTQVGNWFKNRRQRD-----RAAAAKNRLQHQSIGQSGMRSL 241
Query: 352 GDALTATH 375
D TH
Sbjct: 242 ADPGCPTH 249
>ref|NP_291061.1| protocadherin gamma subfamily C, 5 [Mus musculus]
gi|13876364|gb|AAK26102.1| protocadherin gamma C5 [Mus
musculus] gi|22164116|gb|AAM93564.1| protocadherin gamma
C-V [Mus musculus]
Length = 944
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Frame = -2
Query: 431 VLCQSAACVCAWTCSITRGCVAVRASPRERVGEVPSDVSLSACD--AARLRV 282
VLC + C C W R V + P VG V D+ L D + RLR+
Sbjct: 15 VLCMLSLCCCGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKGTDLLSRRLRL 66
>gb|AAM93563.1| protocadherin C5 gamma C-I [Mus musculus]
Length = 871
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Frame = -2
Query: 431 VLCQSAACVCAWTCSITRGCVAVRASPRERVGEVPSDVSLSACD--AARLRV 282
VLC + C C W R V + P VG V D+ L D + RLR+
Sbjct: 15 VLCMLSLCCCGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKGTDLLSRRLRL 66
