KCC001803A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001803A_C01 KCC001803A_c01
ctcagctctggcgtgaaggtggctagcattaacacagtcagcccgatttccagcctggtt
cttttcgtggagggtggtgcAGCTGCAGAGACCCCTGCCACTGCCGGAGCCAGCAAGGTG
CTGGAGGTTGCCGCGTTTAAGGCCACGGCGAACCGCTCTACTTTCCGTCTGACGCGCGAG
CTGGAGAAGATCGGCGCGACCTCGTTCGCGCGCGCCGGTCGCGACCATGTCGCCTTCGGC
GTCGACGCAACCCGCCTGAACCAGCTGGAGGCGCTGGAGATCCTGGCGGACGCGGTCGTG
AACGCCCGCTACACGTACTGGGAGGTGCGCGACAGCCTGGACGCCGTGAAGGAGCAGCTG
GCTGCGCAGCTGCGCAACCCCCTGACCGCCGTGAACGAGGTGCTGCACCGCACGGCCTTC
GAGGGCGGCCTGGGCCACTCGCTGGTGGTGGACCCCTCCGTGGTGGACGGCTTCACCAAC
GAAACGCTGAAGGAGTACGTTCACAGCATCATGGCGCCCTCGCGCGTGGTGCTGGCCGCC
TCCGGCGTGGACCACGCCGAGCTGACGGCGCTGGCGACGCCGCTGCTGAACCTGCACGGC
AACGCCCACCCGGCTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001803A_C01 KCC001803A_c01
         (617 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB55500.1| putative mitochondrial processing peptidase alph...   145  6e-34
sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha su...   144  1e-33
gb|AAK59675.1| putative mitochondrial processing peptidase alpha...   141  7e-33
ref|NP_566548.1| mitochondrial processing peptidase alpha subuni...   141  7e-33
pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) al...   140  1e-32

>dbj|BAB55500.1| putative mitochondrial processing peptidase alpha subuunit,
           mitochondrial recursor(ALPHA-MPP) [Oryza sativa
           (japonica cultivar-group)]
          Length = 884

 Score =  145 bits (365), Expect = 6e-34
 Identities = 76/197 (38%), Positives = 119/197 (59%)
 Frame = +1

Query: 1   LSSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRE 180
           L +G+K+AS  +VSP +S+ L+++ G+  ETPA++GAS +LE  AFK+T NRS  RL RE
Sbjct: 127 LPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLVRE 186

Query: 181 LEKIGATSFARAGRDHVAFGVDATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQL 360
           +E IG    A A R+ + +  DA +    E +E+L D+V N  +  WE+++ L+ +K ++
Sbjct: 187 VEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKAEI 246

Query: 361 AAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNETLKEYVHSIMAPSRVVLAA 540
           A    NP   + E LH   + G L   L+   S +    +  L+E++       R+VLAA
Sbjct: 247 AEVSDNPQGLLLEALHSAGYSGALAKPLMAPQSAIHRLDSSILEEFIAENYTAPRMVLAA 306

Query: 541 SGVDHAELTALATPLLN 591
           SGV+H EL ++A PLL+
Sbjct: 307 SGVEHDELVSIAEPLLS 323

>sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha subunit, mitochondrial
           precursor (Alpha-MPP) (Ubiquinol-cytochrome C reductase
           subunit II) gi|421956|pir||S23558 ubiquinol-cytochrome-c
           reductase (EC 1.10.2.2) alpha chain precursor - potato
           gi|21493|emb|CAA46990.1| mitochondrial processing
           peptidase [Solanum tuberosum]
          Length = 504

 Score =  144 bits (362), Expect = 1e-33
 Identities = 76/197 (38%), Positives = 122/197 (61%)
 Frame = +1

Query: 1   LSSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRE 180
           L++G+KVAS  +V+P +S+ L+V+ G+  ETPA+ GA+ +LE  AFK+T NRS  R+ RE
Sbjct: 80  LANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVRE 139

Query: 181 LEKIGATSFARAGRDHVAFGVDATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQL 360
           +E IG    A A R+H+ +  DA +    + +E+LAD V N  +  WEV++ L+ VK ++
Sbjct: 140 IEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEI 199

Query: 361 AAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNETLKEYVHSIMAPSRVVLAA 540
           +   +NP   + E +H   + G  G+SL+   + ++   +  L+E+V       R+VLAA
Sbjct: 200 SEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLAA 259

Query: 541 SGVDHAELTALATPLLN 591
           SGV+H E   +A PLL+
Sbjct: 260 SGVEHEEFLKVAEPLLS 276

>gb|AAK59675.1| putative mitochondrial processing peptidase alpha subunit
           [Arabidopsis thaliana]
          Length = 499

 Score =  141 bits (356), Expect = 7e-33
 Identities = 76/197 (38%), Positives = 115/197 (57%)
 Frame = +1

Query: 1   LSSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRE 180
           L +G+ +A+  + +P +S+ L+V+ G+  ETP   GA+ +LE  AFK+T NRS FRL RE
Sbjct: 79  LPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVRE 138

Query: 181 LEKIGATSFARAGRDHVAFGVDATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQL 360
           +E IG  + A A R+ + + +DA +    E +E+L D+V N  +  WEV + L  VK ++
Sbjct: 139 IEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKVEI 198

Query: 361 AAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNETLKEYVHSIMAPSRVVLAA 540
                NP+  + E +H   + G L + L    S + G T E L+ +V      SR+VLAA
Sbjct: 199 GEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAA 258

Query: 541 SGVDHAELTALATPLLN 591
           SGVDH EL  +  PLL+
Sbjct: 259 SGVDHEELLKVVEPLLS 275

>ref|NP_566548.1| mitochondrial processing peptidase alpha subunit -related
           [Arabidopsis thaliana] gi|29839443|sp|O04308|MPA2_ARATH
           Probable mitochondrial processing peptidase alpha
           subunit 2, mitochondrial precursor (Alpha-MPP 2)
           gi|2062155|gb|AAB63629.1| mitochondrial processing
           peptidase alpha subunit precusor isolog [Arabidopsis
           thaliana] gi|9279647|dbj|BAB01147.1| mitochondrial
           processing peptidase alpha subunit [Arabidopsis
           thaliana] gi|23297133|gb|AAN13101.1| putative
           mitochondrial processing peptidase alpha subunit
           [Arabidopsis thaliana]
          Length = 499

 Score =  141 bits (356), Expect = 7e-33
 Identities = 76/197 (38%), Positives = 115/197 (57%)
 Frame = +1

Query: 1   LSSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRE 180
           L +G+ +A+  + +P +S+ L+V+ G+  ETP   GA+ +LE  AFK+T NRS FRL RE
Sbjct: 79  LPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVRE 138

Query: 181 LEKIGATSFARAGRDHVAFGVDATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQL 360
           +E IG  + A A R+ + + +DA +    E +E+L D+V N  +  WEV + L  VK ++
Sbjct: 139 IEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKVEI 198

Query: 361 AAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNETLKEYVHSIMAPSRVVLAA 540
                NP+  + E +H   + G L + L    S + G T E L+ +V      SR+VLAA
Sbjct: 199 GEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTASRMVLAA 258

Query: 541 SGVDHAELTALATPLLN 591
           SGVDH EL  +  PLL+
Sbjct: 259 SGVDHEELLKVVEPLLS 275

>pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) alpha-II chain
           precursor - potato gi|587562|emb|CAA56520.1|
           mitochondrial processing peptidase [Solanum tuberosum]
          Length = 504

 Score =  140 bits (354), Expect = 1e-32
 Identities = 75/197 (38%), Positives = 118/197 (59%)
 Frame = +1

Query: 1   LSSGVKVASINTVSPISSLVLFVEGGAAAETPATAGASKVLEVAAFKATANRSTFRLTRE 180
           L++G+K+AS  + SP +S+ L+V+ G+  E PA+ GA+ +LE  AFK+T NRS  R+ RE
Sbjct: 80  LTNGLKIASEISASPAASIGLYVDCGSIYEAPASYGATHLLERMAFKSTLNRSHLRIVRE 139

Query: 181 LEKIGATSFARAGRDHVAFGVDATRLNQLEALEILADAVVNARYTYWEVRDSLDAVKEQL 360
           +E IG    A A R+H+ +  DA +    + +E+L D+V N  +  WEV + L+ VK ++
Sbjct: 140 VEAIGGNVTAAASREHLIYTYDALKTYVPQMVELLVDSVRNPAFLDWEVSEQLEKVKSEI 199

Query: 361 AAQLRNPLTAVNEVLHRTAFEGGLGHSLVVDPSVVDGFTNETLKEYVHSIMAPSRVVLAA 540
               +NP   + E +H   + G  G+SL    + V+   +  L+E+V       R+VLAA
Sbjct: 200 DEYTKNPQHLLLEAVHSAGYSGPYGNSLAATEATVNRLNSTVLEEFVAENYTAPRIVLAA 259

Query: 541 SGVDHAELTALATPLLN 591
           SGV+H EL  +A PLL+
Sbjct: 260 SGVEHEELLKVAEPLLS 276



EST assemble image


clone accession position
1 HC002d04_r AV631973 1 498
2 LCL088g04_r AV631099 130 617
3 LC096g11_r AV625715 201 458




Chlamydomonas reinhardtii
Kazusa DNA Research Institute