KCC001802A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001802A_C01 KCC001802A_c01
ctcccctcacccattaACACCCACACTTTCCTCTCCTCCAAACTCGTCAAAATGGCCACC
GAGCAGAGCTACATCATGATCAAGCCTGACGGCGTCCAGCGCGGCCTGGTCGGCGAGGTG
ATCAAGCGCTTCGAGCAGCGCGGCTACACGCTCAAGGGCCTGAAGCTGATGAACGTGGAG
AAGTCGCTGGCTGAGAAGCACTACGAGGACCTGTCCGCCCGCCCCTTCTTCCCGGCCCTG
GTCGACTACATCTGCAGCGGCCCCGTTGTGGCCATGGTGTGGGAGGGCAAGGGCGTTGTG
GCCACCGGCCGCAAGATGATCGGCGCCACCAACCCCCTGGCCTCCGAGCCCGGCACCATC
CGCGGTGACTTCGCCATCGAGGTCGGCCGCAACGTGATCCACGGTTCCGACTCGGTCGAG
TCCGCCACCCGCGAGATTGGCCTGTGGTTCCCCGAGGGCGTCGCCCAGTGGACCCCCGTG
GCCAAGCCCTGGATCTACGAGTAAACAACTGGCCTCAGCAGCAGCAGGTGCTTGCATGGG
CGCCTGGAAGCTTGCCATGGGCAATTGTTAGTCGCTGATGTGTGGTAATGGAAGATGTAA
GGTGATTGAAGGTGGAGGTGTGCGTGGGCATAGGGCGAGGTGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001802A_C01 KCC001802A_c01
         (644 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG60181.1|AC084763_1 putative nucleoside diphosphate kinase ...   241  5e-63
gb|AAF91407.1|AF271362_1 nucleoside diphosphate kinase [Lolium p...   240  1e-62
ref|NP_567346.1| nucleoside-diphosphate kinase [Arabidopsis thal...   239  3e-62
sp|Q96559|NDK_HELAN NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KIN...   238  4e-62
sp|P93554|NDK1_SACOF NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (ND...   238  4e-62

>gb|AAG60181.1|AC084763_1 putative nucleoside diphosphate kinase [Oryza sativa]
           gi|31433540|gb|AAP55038.1| putative nucleoside
           diphosphate kinase [Oryza sativa (japonica
           cultivar-group)]
          Length = 151

 Score =  241 bits (616), Expect = 5e-63
 Identities = 111/150 (74%), Positives = 133/150 (88%)
 Frame = +1

Query: 52  MATEQSYIMIKPDGVQRGLVGEVIKRFEQRGYTLKGLKLMNVEKSLAEKHYEDLSARPFF 231
           MA EQ++IMIKPDGVQRGL+GEVI RFE++G+ LK +KL+NVEKS AEKHY DLS++PFF
Sbjct: 1   MALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFF 60

Query: 232 PALVDYICSGPVVAMVWEGKGVVATGRKMIGATNPLASEPGTIRGDFAIEVGRNVIHGSD 411
             LV+YI SGPVVAMVWEGK VV+TGRK++GATNPLA+EPGTIRGDFA+++GRNVIHGSD
Sbjct: 61  GGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSD 120

Query: 412 SVESATREIGLWFPEGVAQWTPVAKPWIYE 501
           SVE+A +EI LWFPEG+A+W     PWIYE
Sbjct: 121 SVENARKEIALWFPEGIAEWRSNQHPWIYE 150

>gb|AAF91407.1|AF271362_1 nucleoside diphosphate kinase [Lolium perenne]
          Length = 150

 Score =  240 bits (612), Expect = 1e-62
 Identities = 112/147 (76%), Positives = 130/147 (88%)
 Frame = +1

Query: 61  EQSYIMIKPDGVQRGLVGEVIKRFEQRGYTLKGLKLMNVEKSLAEKHYEDLSARPFFPAL 240
           EQ++IMIKPDGVQRGL+GE+I RFE++G+ LKGLKL NVEKS AE+HY DLS++PFF  L
Sbjct: 3   EQTFIMIKPDGVQRGLIGEIISRFEKKGFYLKGLKLQNVEKSFAEQHYADLSSKPFFGGL 62

Query: 241 VDYICSGPVVAMVWEGKGVVATGRKMIGATNPLASEPGTIRGDFAIEVGRNVIHGSDSVE 420
           V+YI SGPVVAMVWEGK VVATGRK+IGATNPLASEPGTIRGDFA+++GRNVIHGSDSVE
Sbjct: 63  VEYIVSGPVVAMVWEGKSVVATGRKIIGATNPLASEPGTIRGDFAVDIGRNVIHGSDSVE 122

Query: 421 SATREIGLWFPEGVAQWTPVAKPWIYE 501
           +A +EI LWFPEG+A WT     WIYE
Sbjct: 123 NARKEIALWFPEGLAGWTSSQHNWIYE 149

>ref|NP_567346.1| nucleoside-diphosphate kinase [Arabidopsis thaliana]
          Length = 169

 Score =  239 bits (610), Expect = 3e-62
 Identities = 114/163 (69%), Positives = 132/163 (80%)
 Frame = +1

Query: 13  INTHTFLSSKLVKMATEQSYIMIKPDGVQRGLVGEVIKRFEQRGYTLKGLKLMNVEKSLA 192
           IN    L     K   EQ++IMIKPDGVQRGL+GEVI RFE++G+TLKGLKL++VE+S A
Sbjct: 6   INLFCLLRITSNKKTMEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFA 65

Query: 193 EKHYEDLSARPFFPALVDYICSGPVVAMVWEGKGVVATGRKMIGATNPLASEPGTIRGDF 372
           EKHYEDLS++ FF  LVDYI SGPVVAM+WEGK VV TGRK+IGATNP ASEPGTIRGDF
Sbjct: 66  EKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDF 125

Query: 373 AIEVGRNVIHGSDSVESATREIGLWFPEGVAQWTPVAKPWIYE 501
           AI++GRNVIHGSDSVESA +EI LWFP+G   W     PW+YE
Sbjct: 126 AIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 168

>sp|Q96559|NDK_HELAN NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
           gi|7434623|pir||T14183 nucleoside-diphosphate kinase (EC
           2.7.4.6) - common sunflower gi|1619958|gb|AAB67996.1|
           nucleoside diphosphate kinase [Helianthus annuus]
          Length = 148

 Score =  238 bits (608), Expect = 4e-62
 Identities = 111/147 (75%), Positives = 129/147 (87%)
 Frame = +1

Query: 61  EQSYIMIKPDGVQRGLVGEVIKRFEQRGYTLKGLKLMNVEKSLAEKHYEDLSARPFFPAL 240
           EQ++IMIKPDGVQRGLVGE+I RFE++G+TLKGLKL+ V+++ AEKHY DLSA+PFF  L
Sbjct: 2   EQTFIMIKPDGVQRGLVGEIIGRFEKKGFTLKGLKLLTVDQAFAEKHYADLSAKPFFNGL 61

Query: 241 VDYICSGPVVAMVWEGKGVVATGRKMIGATNPLASEPGTIRGDFAIEVGRNVIHGSDSVE 420
           V+YI SGPVVAMVWEGK VV TGRK+IGATNP  S PGTIRGDFAI++GRNVIHGSD+VE
Sbjct: 62  VEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESPPGTIRGDFAIDIGRNVIHGSDAVE 121

Query: 421 SATREIGLWFPEGVAQWTPVAKPWIYE 501
           SA +EIGLWFPEGVA W+    PWIYE
Sbjct: 122 SAKKEIGLWFPEGVANWSSSLHPWIYE 148

>sp|P93554|NDK1_SACOF NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I) (PP18)
           gi|1777930|gb|AAB40609.1| nucleoside diphosphate kinase
          Length = 149

 Score =  238 bits (608), Expect = 4e-62
 Identities = 109/147 (74%), Positives = 127/147 (86%)
 Frame = +1

Query: 61  EQSYIMIKPDGVQRGLVGEVIKRFEQRGYTLKGLKLMNVEKSLAEKHYEDLSARPFFPAL 240
           E ++IMIKPDGVQRGL+GE+I RFE++G+ LK LKL+NVE+S AEKHY DLS++PFF  L
Sbjct: 2   ESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGL 61

Query: 241 VDYICSGPVVAMVWEGKGVVATGRKMIGATNPLASEPGTIRGDFAIEVGRNVIHGSDSVE 420
           VDYI SGPVVAMVWEGK VV TGRK+IGATNPL SEPGTIRGDFA+++GRNVIHGSDS+E
Sbjct: 62  VDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIE 121

Query: 421 SATREIGLWFPEGVAQWTPVAKPWIYE 501
           SA +EI LWFPEG+A W     PWIYE
Sbjct: 122 SANKEIALWFPEGLADWQSSQHPWIYE 148



EST assemble image


clone accession position
1 LC092h01_r AV625454 1 154
2 HC009c08_r AV632524 17 545
3 HCL045f05_r AV642099 20 308
4 MX241e07_r BP091599 22 458
5 HC002b04_r AV631953 30 543
6 HC069e09_r AV637158 31 477
7 MXL082f05_r BP097867 36 404
8 HC098a08_r AV639333 53 528
9 MX218g05_r BP090098 366 646




Chlamydomonas reinhardtii
Kazusa DNA Research Institute