KCC001800A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001800A_C01 KCC001800A_c01
CTCTAAACACTCTACGCGCTAACTTAGCCTTCTGTCGTCGTCGACTTCCCCGGTCAACCG
AAGCTTCCATTCGAGATGGCGTCATCCATTGTGATGGGCGTTACCGCCCTGGTTTTCTGC
ACTTGGGCTGTGTCGCTGGCGGGCCTTGCCTCTGTCCAGGACAAGTGTGAGTCCGGATGG
TCGGATGCTCTTGGACTGGCCATCAACGGCTACTCCACTGGCCTTGCCTGCTACTCCTTC
TTCCGCTACTACTGGTTCATCGTGAGCCTTGAGGTCTGCCTGATCTTTGGTCTGGCCGGT
GTCCTTGCTTCCGGCGCCTACGCCAAGTTCCGCAACTCCTTCCTGGGCCTGTTCTGCGTG
GCAACCCTGCTGTACATCCAGATGAGCGACACCTCCCTGACCACCGACACCTTGACTGCT
GACGCTGCCCAGAGCCAGCTCAAGAACCGCGTGCGCACCTGGATCGCCGGCTCCATCATG
ACCGCCACCGTCAACTGCTTCCTGATCATCGCCCTGGGCATGACTGAGTCAGACGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001800A_C01 KCC001800A_c01
         (538 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_296361.1| peptide ABC transporter, periplasmic peptide-bi...    44  0.001
ref|XP_321554.1| ENSANGP00000018144 [Anopheles gambiae] gi|19572...    43  0.003
ref|XP_310699.1| ENSANGP00000010073 [Anopheles gambiae] gi|21294...    42  0.004
ref|NP_176463.2| hypothetical protein [Arabidopsis thaliana] gi|...    42  0.005
pir||S29599 acrosin (EC 3.4.21.10) precursor - guinea pig (fragm...    42  0.007

>ref|NP_296361.1| peptide ABC transporter, periplasmic peptide-binding protein
           [Deinococcus radiodurans]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 43/127 (33%), Positives = 50/127 (38%), Gaps = 7/127 (5%)
 Frame = +2

Query: 161 TSVSPDGRMLLDWPSTATPLALPATPSSATTGSS*ALRSA*SLVWPVSLLPAPTPSSATP 340
           TS S   R L    S A      ++ SSA    S A  S     WP +  P PTP S + 
Sbjct: 301 TSTSSTSRALSSPTSRARKSRAASSRSSAPPRCSAARPS-----WPTTSTP-PTPRSPSC 354

Query: 341 SWACSAWQPC-------CTSR*ATPP*PPTP*LLTLPRASSRTACAPGSPAPS*PPPSTA 499
           S  C+   PC        +S   T   P  P     P     T   PGS APS  PP T 
Sbjct: 355 SVTCAFAAPCRVRSTAAASSTPCTTSLPACPVTAWRPPTRRSTPTRPGSSAPSTSPPPTR 414

Query: 500 S*SSPWA 520
             S+PWA
Sbjct: 415 R-STPWA 420

>ref|XP_321554.1| ENSANGP00000018144 [Anopheles gambiae] gi|19572379|emb|CAD27925.1|
            putative TPR-containing phosphoprotein [Anopheles
            gambiae] gi|21288614|gb|EAA00907.1| ENSANGP00000018144
            [Anopheles gambiae str. PEST]
          Length = 1200

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = -1

Query: 466  RSRCAR----GS*AGSGQRQQSRCRWSGRCRSSGCTAGLPR-RTGPGRSCGTWRRRRKQG 302
            RSR       GS AGSG R +SR R   R RS        R R+G G S    R R +  
Sbjct: 1078 RSRSGSGSRAGSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSRSGSGGS----RSRSRSR 1133

Query: 301  HRPDQRSGRPQGSR*TSSSGRRSSRQGQWSSR*WPVQEHPTIRTHTCPGQRQGPPATQ 128
             R      R  GSR  S SG ++SR  + S      +     R+ +  G RQ  P ++
Sbjct: 1134 SRSQSAGSRKSGSRSRSRSGSQASRGSRRSRSRSRSRSGSRSRSRSGSGSRQASPISR 1191

>ref|XP_310699.1| ENSANGP00000010073 [Anopheles gambiae] gi|21294498|gb|EAA06643.1|
           ENSANGP00000010073 [Anopheles gambiae str. PEST]
          Length = 682

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 51/174 (29%), Positives = 66/174 (37%), Gaps = 11/174 (6%)
 Frame = -1

Query: 490 RWRS*WSRRSRCARGS*AGSGQRQQS----------RCRWSGRCRSSGCTAGLPRRTGPG 341
           R RS  SRRSR  RGS + S  R +S          R R   R RS   +    R     
Sbjct: 135 RSRSRQSRRSRNRRGSHSASVSRSRSRSGSRLSSQRRVRTPSRSRSRSGSGSRSRSRSRS 194

Query: 340 RSCGTWRRRRKQGHRPDQRSGRPQGSR*TSSSGRRSSRQGQWSSR*WPVQEHPTIRTHTC 161
           RS    R R   G R   RSG    SR  S SG RS  + +  SR          R+ + 
Sbjct: 195 RSQSRSRSRSGSGSRSRSRSGSGSRSRSRSGSGSRSRSRSRSRSR---------ARSRSG 245

Query: 160 PGQRQGPPATQPKCRKPGR*RPSQWMTPSRMEASVDRG-SRRRQKAKLARRVFR 2
                   +++ K R     R         +  SV R  SR R +++ +R V R
Sbjct: 246 SASSSRSRSSKSKSRSRSVSRSVSRSVSRSVSRSVSRSVSRSRSRSRSSRSVSR 299

 Score = 35.0 bits (79), Expect = 0.62
 Identities = 33/93 (35%), Positives = 39/93 (41%)
 Frame = -1

Query: 505 SGSS*RWRS*WSRRSRCARGS*AGSGQRQQSRCRWSGRCRSSGCTAGLPRRTGPGRSCGT 326
           SGS  R RS    RS+    S +GSG R +SR     R RS         R+G G     
Sbjct: 182 SGSGSRSRSRSRSRSQSRSRSRSGSGSRSRSRSGSGSRSRS---------RSGSGSRS-- 230

Query: 325 WRRRRKQGHRPDQRSGRPQGSR*TSSSGRRSSR 227
            R R +   R   RSG    SR  SS  +  SR
Sbjct: 231 -RSRSRSRSRARSRSGSASSSRSRSSKSKSRSR 262

>ref|NP_176463.2| hypothetical protein [Arabidopsis thaliana]
           gi|6630459|gb|AAF19547.1|AC007190_15 F23N19.12
           [Arabidopsis thaliana]
          Length = 312

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
 Frame = +2

Query: 311 PAPTPSSATPSWACSAWQPCCTSR*ATPP*PP---------TP*LLTLPRASSRTACAPG 463
           P+ +PSSA PS    +  P  +   ++PP PP         +P L   P +SS ++  P 
Sbjct: 41  PSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPS 100

Query: 464 SPAPS*PPPSTAS*SSP 514
           S +PS PPP + S SSP
Sbjct: 101 SLSPSSPPPLSLSPSSP 117

 Score = 31.6 bits (70), Expect = 6.9
 Identities = 19/47 (40%), Positives = 26/47 (54%)
 Frame = +2

Query: 374 TSR*ATPP*PPTP*LLTLPRASSRTACAPGSPAPS*PPPSTAS*SSP 514
           TS  +  P   +P L   P +SS ++  P S +PS PPP + S SSP
Sbjct: 22  TSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 68

>pir||S29599 acrosin (EC 3.4.21.10) precursor - guinea pig (fragment)
           gi|49560|emb|CAA78137.1| preproacrosin [Cavia porcellus]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 37/105 (35%), Positives = 41/105 (38%), Gaps = 5/105 (4%)
 Frame = +2

Query: 191 LDW-PSTATPLAL----PATPSSATTGSS*ALRSA*SLVWPVSLLPAPTPSSATPSWACS 355
           LDW  S   P AL    PATPS  TTG                 LP   P S+ P  A  
Sbjct: 281 LDWIASKIGPSALHAIQPATPSPPTTGP----------------LPPARPPSSRPPTAKP 324

Query: 356 AWQPCCTSR*ATPP*PPTP*LLTLPRASSRTACAPGSPAPS*PPP 490
            W     +R   PP PP P     P+     A AP  P+ S PPP
Sbjct: 325 PWYFQNLARPPRPPRPPRPLQPFAPQPQPPAAQAPPPPSLSSPPP 369



EST assemble image


clone accession position
1 HC020b03_r AV633376 1 487
2 LC038h02_r AV621638 90 578
3 MXL077c05_r BP097523 90 524
4 MX001h02_r BP086097 90 615
5 MX058h08_r BP088373 94 519
6 HC046c07_r AV635432 94 550
7 HC084a07_r AV638261 94 581
8 MX031g08_r BP087319 99 577
9 HC002b02_r AV631951 99 564
10 HC041b09_r AV635043 99 635
11 MX002e07_r BP086133 99 561
12 HC074g11_r AV637569 99 547
13 MX256a10_r BP092568 100 640
14 HC044f03_r AV635301 103 561
15 HC071c01_r AV637292 105 607
16 MX063c02_r BP088553 111 460
17 MX259e07_r BP092814 113 562
18 HC002d11_r AV631979 153 635




Chlamydomonas reinhardtii
Kazusa DNA Research Institute