KCC001794A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001794A_C01 KCC001794A_c01
gggtgatgtccttacaggagctgctgcccccaactcttctgcctgcctacgCACGCGCAC
ACACATACCTTGTCGCAGTCCGTACCCTTGACACCGCATAGACACACATCTACTGTCTCG
CTCTGCTAGGAGTGGAGGTCCGCCGCCAGGGGGTCCCATGCTGACATGGCCCCGCCATCA
ACAACTCCCTGCGCACCCGCCCTGATCCTCGCCAACCAAGCCGGCCTGACGACTCAGGCC
GCACCATGGTGACATCTTTGACTGACTGATCCCTCGAGTCCCAATCCGGTCAGGTTCCTA
AGCCTTATAAGCCTGCACCGCCCTGCCTCCGCACTAGCCGCGGACCCACCCCACTGCTCG
GGCGTGCACTAGACCAAACACACTCTGAACGATAATGAGCACAGAGCCAAATTCGCATCC
GCGCACAGCCCCGCGACGCCCGCGTTCCTAAGCCGTGCACCAGCGTGATGCACCCGGCCG
TGCGCTTCCGAACAGCCCGGGCTGCTGTgcgccaggcacacaggcagacccagacacgcg
acgcgaccatggcgcagccactgcgcaaggctgcgcgcccagctgccg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001794A_C01 KCC001794A_c01
         (588 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_319685.1| ENSANGP00000021422 [Anopheles gambiae] gi|30174...    42  0.005
dbj|BAC82922.1| hypothetical protein [Oryza sativa (japonica cul...    40  0.019
ref|NP_611375.1| CG15094-PA [Drosophila melanogaster] gi|2465525...    36  0.46
gb|AAQ23571.1| RE35348p [Drosophila melanogaster]                      36  0.46
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|...    36  0.46

>ref|XP_319685.1| ENSANGP00000021422 [Anopheles gambiae] gi|30174262|gb|EAA14814.2|
           ENSANGP00000021422 [Anopheles gambiae str. PEST]
          Length = 535

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 26/77 (33%), Positives = 41/77 (52%), Gaps = 2/77 (2%)
 Frame = -1

Query: 570 PCAVAAPWSRRVSGSACVPGAQQPGLFGSARPGASRWCTA*ERGRRGAV--RGCEFGSVL 397
           P    A  ++ V G   V G  Q  +F S     SRW  A ERGR G +   G +FG+V+
Sbjct: 164 PFCAHAGGAKAVIGLRIVQGLSQGFIFPSTHTMLSRWAPASERGRLGTLSYAGAQFGTVI 223

Query: 396 IIVQSVFGLVHARAVGW 346
           ++  +V G++ + ++GW
Sbjct: 224 ML--AVSGVLASSSMGW 238

>dbj|BAC82922.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 287

 Score = 40.4 bits (93), Expect = 0.019
 Identities = 40/129 (31%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
 Frame = +2

Query: 119 RSARSGGPPPGGP----MLTWPRHQQLPAHPP*SSPTKPA*RLRPHHGDIFD*LIPRVPI 286
           R+AR+  PPP  P    +L    H + P  PP     +P  RLRPHH         R   
Sbjct: 168 RAARATPPPPPSPPPLLLLQAHLHLRRPVRPP---RQRPVCRLRPHHH--------RPRH 216

Query: 287 RSGS*AL*ACTALPPH*PRTHPTARACTRPNTL*TIMSTEPNSHPRTAPRRPRS*AVHQR 466
            SG        A  P   RT PT+R  TR ++      T  +S PR +P    S +    
Sbjct: 217 ESGH----FLAATSPMTTRT-PTSRPTTRTSSATAPSPTASSSSPRVSPPTSSSPSSSST 271

Query: 467 DAPGRALPN 493
            +P R  P+
Sbjct: 272 PSPARRRPS 280

>ref|NP_611375.1| CG15094-PA [Drosophila melanogaster] gi|24655255|ref|NP_725828.1|
           CG15094-PB [Drosophila melanogaster]
           gi|21626997|gb|AAF57636.2| CG15094-PA [Drosophila
           melanogaster] gi|21626998|gb|AAM68445.1| CG15094-PB
           [Drosophila melanogaster]
          Length = 443

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 27/76 (35%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 567 CAVAAPWSRRVSGSACVPGAQQPGLFGSARPGASRWCTA*ERGR--RGAVRGCEFGSVLI 394
           CAV   W+  V   A V G  Q  +F S     S+W  A ERGR       G +FG+V++
Sbjct: 69  CAVNGGWTVVVVLRA-VQGLCQGVIFPSTHTFLSKWAPAEERGRLVGYTYSGSQFGTVVM 127

Query: 393 IVQSVFGLVHARAVGW 346
           +  SV G + + ++GW
Sbjct: 128 L--SVSGYIASSSLGW 141

>gb|AAQ23571.1| RE35348p [Drosophila melanogaster]
          Length = 497

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 27/76 (35%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 567 CAVAAPWSRRVSGSACVPGAQQPGLFGSARPGASRWCTA*ERGR--RGAVRGCEFGSVLI 394
           CAV   W+  V   A V G  Q  +F S     S+W  A ERGR       G +FG+V++
Sbjct: 123 CAVNGGWTVVVVLRA-VQGLCQGVIFPSTHTFLSKWAPAEERGRLVGYTYSGSQFGTVVM 181

Query: 393 IVQSVFGLVHARAVGW 346
           +  SV G + + ++GW
Sbjct: 182 L--SVSGYIASSSLGW 195

>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
           gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
           sapiens]
          Length = 580

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 41/147 (27%), Positives = 55/147 (36%), Gaps = 8/147 (5%)
 Frame = +2

Query: 104 THLLSRSARSGGPPPGGPMLTWPRHQQLPAH-------PP*SSPTKPA*RLRPHHGDIFD 262
           T   SR++ +  PP   P  T PR     +H       PP +SPT+   R  P       
Sbjct: 177 TRTPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRASPTRRPPRASPTRTP--- 233

Query: 263 *LIPRVPIRSGS*AL*ACTALPPH*PRTHPTARACTRPNTL*TIMSTEPNSHPRTAPRRP 442
              PR  +R+   A  + T +PP    T    RA    +       T P + PRT PR  
Sbjct: 234 ---PRESLRTSHRA--SPTRMPPRASPTRRPPRASPTGSPPRASPMTPPRASPRTPPR-- 286

Query: 443 RS*AVHQRDAPGRA-LPNSPGCCAPGT 520
                     P RA L  +P   +P T
Sbjct: 287 ----ASPTTTPSRASLTRTPSWASPTT 309



EST assemble image


clone accession position
1 MX013g03_r BP086652 1 341
2 MX256f11_r BP092616 1 346
3 HCL051f09_r AV642435 1 498
4 CS001c08_r AV397945 52 600




Chlamydomonas reinhardtii
Kazusa DNA Research Institute