KCC001791A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001791A_C01 KCC001791A_c01
cCAGGCCACTCCAACTTTCAATTTTCTCCTTTCCTCACCACTCCTTGCAAAGATGATGCT
CACCGCTAAGACTGGCGTCCCCGCCCTGCGCGTCCAGCGCCGCAGCGCTGCCTCTGGCGC
TCGTCCCGTGCGCCCTGCCGTGGGCCGCTGCCAGAAGCTGGTGGTGCGCGCTGAGCAGAG
CAGCAGCACCGAGACCACCTCGTTTGACTCGGAGAAGGTGCTGAAGGACCTGCAGGAGAA
GTGGGACGCCGTTGACAACAAGGGCGCCGTGGCCGCTTACGCTGCCGGTGCTGTTGTTGC
GCTGTGGCTCAGCTCCACCATCGTCAACGCCATCAACGCCGTGCCTCTGCTGCCCAAGCT
GATGGAGCTGGTTGGCCTGGGCTACTCGGCCTGGTTCACCTACCGCTACCTGCTGTTTAA
GTCGAGCCGCGAGGAGCTGATGAAGGACATTGGCGACCTGAGCAAGAAGATCTCTGGCTC
GGAGTAAGCGCTCTGGCGCTAGCCCCTTTACAGCCTGCGGCGTGGCGCTGGGTGGACACA
CCCAACTACGCGGCTAGTGGCCGTTGCTGGGTCCACCGACCGGGCGTGGCATGCCTTGTA
TGTGTTGTACGGTATGATGTGTATTATGTCCGCACGCGGTTGCGCCAGCGAAGATTGCGC
AGGAGAGCTCGCGGACTGGGAGTGAAGTACTGGGTGCTTCTGGCAGGGGAGTGAATGTGT
TGGCCCCCTTTGATACCCCGGGGGTGCGACTGCATTTGATTCTGACGATTGATTCTTCTT
AGCGCGGACGTGAAACCCTGGCTGATCCGACTGTTAGGGCTCCCGCCCCCCGTTGGGTGA
TGCATGCGgtgcaaccgaccatttttaaaacaccgctgctgaaaaaaaaaaaaaaaaaac
aattcgaactagtctctctctctctctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001791A_C01 KCC001791A_c01
         (928 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567210.1| expressed protein [Arabidopsis thaliana] gi|748...   145  1e-33
gb|AAB00107.1| unknown                                                144  3e-33
ref|NP_566086.1| expressed protein [Arabidopsis thaliana] gi|748...    95  1e-18
ref|NP_568035.1| expressed protein [Arabidopsis thaliana] gi|215...    94  3e-18
pir||T05637 hypothetical protein F20D10.220 - Arabidopsis thalia...    94  3e-18

>ref|NP_567210.1| expressed protein [Arabidopsis thaliana] gi|7485223|pir||T01726
           hypothetical protein A_IG002N01.18 - Arabidopsis
           thaliana gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene
           product [Arabidopsis thaliana]
           gi|7267612|emb|CAB80924.1| hypothetical protein
           [Arabidopsis thaliana]
           gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18
           [Arabidopsis thaliana] gi|20147123|gb|AAM10278.1|
           AT4g01150/F2N1_18 [Arabidopsis thaliana]
          Length = 164

 Score =  145 bits (365), Expect = 1e-33
 Identities = 74/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
 Frame = +2

Query: 62  TAKTGVPALRVQRRSAASGARPVRPAVGR-CQKLVVRAEQSSSTETTSFDSEKVLKDLQE 238
           T  + VP L  +    +S   P++   G   QK+ +   ++SS ET+S D+ +++ DL+E
Sbjct: 23  TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKE 82

Query: 239 KWDAVDNKGAVAAYAAGAVVALWLSSTIVNAINAVPLLPKLMELVGLGYSAWFTYRYLLF 418
           KWD ++NK  V  Y  GA+VA+WLSS +V AIN+VPLLPK+MELVGLGY+ WF YRYLLF
Sbjct: 83  KWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLF 142

Query: 419 KSSREELMKDIGDLSKKISGSE 484
           KSSR+EL +DI  L KKI+GSE
Sbjct: 143 KSSRKELAEDIESLKKKIAGSE 164

>gb|AAB00107.1| unknown
          Length = 164

 Score =  144 bits (362), Expect = 3e-33
 Identities = 73/142 (51%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
 Frame = +2

Query: 62  TAKTGVPALRVQRRSAASGARPVRPAVGR-CQKLVVRAEQSSSTETTSFDSEKVLKDLQE 238
           T  + VP L  +    +S   P++   G   QK+ +   ++SS ET+S D+ +++ DL+E
Sbjct: 23  TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKE 82

Query: 239 KWDAVDNKGAVAAYAAGAVVALWLSSTIVNAINAVPLLPKLMELVGLGYSAWFTYRYLLF 418
           KWD ++NK  V  Y  GA+VA+W+SS +V AIN+VPLLPK+MELVGLGY+ WF YRYLLF
Sbjct: 83  KWDGLENKSTVLIYGGGAIVAVWVSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLF 142

Query: 419 KSSREELMKDIGDLSKKISGSE 484
           KSSR+EL +DI  L KKI+GSE
Sbjct: 143 KSSRKELAEDIESLKKKIAGSE 164

>ref|NP_566086.1| expressed protein [Arabidopsis thaliana] gi|7485752|pir||T02683
           hypothetical protein At2g46820 [imported] - Arabidopsis
           thaliana gi|3510256|gb|AAC33500.1| expressed protein
           [Arabidopsis thaliana] gi|17473794|gb|AAL38332.1|
           unknown protein [Arabidopsis thaliana]
           gi|21386997|gb|AAM47902.1| unknown protein [Arabidopsis
           thaliana]
          Length = 174

 Score = 95.1 bits (235), Expect = 1e-18
 Identities = 53/140 (37%), Positives = 85/140 (59%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77  VPALRVQRRSAASGA-----RPVRPAVGRCQKLVVRAEQSSSTETTSFDSEKVLKDLQEK 241
           +P L +Q  + A+ A     + VR  V R    V  A  +++TE  + +  +++K  QE 
Sbjct: 35  LPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAP-ATTTEAETTELPEIVKTAQEA 93

Query: 242 WDAVDNKGAVAAYAAGAVVALWLSSTIVNAINAVPLLPKLMELVGLGYSAWFTYRYLLFK 421
           W+ VD+K A+ + A   VVALW S+ +++AI+ +PL+P ++ELVG+GY+ WFTY+ L+FK
Sbjct: 94  WEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFK 153

Query: 422 SSREELMKDIGDLSKKISGS 481
             RE L + +    K I GS
Sbjct: 154 PDREALFEKVKSTYKDILGS 173

>ref|NP_568035.1| expressed protein [Arabidopsis thaliana] gi|21554198|gb|AAM63277.1|
           unknown [Arabidopsis thaliana]
          Length = 193

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 49/114 (42%), Positives = 77/114 (66%), Gaps = 5/114 (4%)
 Frame = +2

Query: 158 LVVRAEQSSSTETTSFDSEKV-----LKDLQEKWDAVDNKGAVAAYAAGAVVALWLSSTI 322
           +V   E++S++E    + E+      L D+  K D+ D   ++  Y +GA+VAL+L+S I
Sbjct: 81  VVAAEEKNSNSEAPQAEDEETQALEFLNDI--KLDS-DKTYSILLYGSGAIVALYLTSAI 137

Query: 323 VNAINAVPLLPKLMELVGLGYSAWFTYRYLLFKSSREELMKDIGDLSKKISGSE 484
           V+++ A+PL PKLME+VGLGY+ WFT RYLLFK +REEL   + ++ K++ GS+
Sbjct: 138 VSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191

>pir||T05637 hypothetical protein F20D10.220 - Arabidopsis thaliana
           gi|4467116|emb|CAB37550.1| hypothetical protein
           [Arabidopsis thaliana] gi|7270793|emb|CAB80475.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 153

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 49/114 (42%), Positives = 77/114 (66%), Gaps = 5/114 (4%)
 Frame = +2

Query: 158 LVVRAEQSSSTETTSFDSEKV-----LKDLQEKWDAVDNKGAVAAYAAGAVVALWLSSTI 322
           +V   E++S++E    + E+      L D+  K D+ D   ++  Y +GA+VAL+L+S I
Sbjct: 41  VVAAEEKNSNSEAPQAEDEETQALEFLNDI--KLDS-DKTYSILLYGSGAIVALYLTSAI 97

Query: 323 VNAINAVPLLPKLMELVGLGYSAWFTYRYLLFKSSREELMKDIGDLSKKISGSE 484
           V+++ A+PL PKLME+VGLGY+ WFT RYLLFK +REEL   + ++ K++ GS+
Sbjct: 98  VSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 151



EST assemble image


clone accession position
1 LC013g01_r AV619826 1 532
2 MX201e01_r BP089139 2 431
3 HC033a11_r AV634414 4 523
4 MX236a12_r BP091257 12 306
5 CM100d06_r AV392862 12 489
6 MXL022g10_r BP094419 19 548
7 LC054h07_r BP094419 402 928




Chlamydomonas reinhardtii
Kazusa DNA Research Institute