KCC001789A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001789A_C01 KCC001789A_c01
ctcttgtaacgctgtaccaactAGTAAGCGGTACAATTCGCCTGAGCCCGAGCAACGCGA
CCTTTCTTGCTCTGTGGATCTCTGATAATCTAACCAGACCAAAACCTTTTCACTAATCTA
GGCAACAATGCAGAGTCTCCAGGGTCAGCGCGCGTTCACTGCGGTGCGCCAGGGTCGGGC
GGGTCCCCTGCGGACTCGCCTGGTCGTGCGCTCGTCTGTTGCCTTGCCATCCACGAAAGC
CGCGAAGAAGCCGAACTTCCCGTTCGTCAAGATTCAGGGCCAGGAGGAGATGAAGCTTGC
ACTGCTGCTGAACGTGGTCGACCCCAACATCGGCGGAGTGCTTATTATGGGTGACCGCGG
CACTGCCAAGTCGGTCGCGGTCCGCGCCCTGGTGGATATGCTTCCCGACATTGACGTGGT
TGAGGGCGACGCCTTCAACAGCTCCCCCACCGACCCCAAGTTCATGGGCCCCGACACCCT
GCAGCGCTTCCGCAACGGCGAGAAGCTGCCCACCGTCCGCATGCGGACCCCCCTGGTGGA
GCTGCCTCTGGGCGCCACCGAGGACCGCATCTGCGGCACCATCGACATCGAGAAGGCGCT
GACGCAGGGCATCAAGGCCTACGAGCCCGGCCTGCTGGCCAAGGCCAACCGCGGCATCCT
GTATGTGGACGAGGTGAACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001789A_C01 KCC001789A_c01
         (680 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK72264.1|AC084767_4 putative chelatase subunit [Oryza sativ...   215  4e-55
ref|NP_683790.1| Mg-protoporyphyrin IX chelatase [Chaetosphaerid...   213  3e-54
ref|NP_050837.1| Mg-protoporyphyrin IX chelatase [Nephroselmis o...   211  1e-53
ref|NP_193583.1| magnesium-chelatase, subunit chlI, chloroplast ...   210  1e-53
ref|NP_894966.1| Protoporphyrin IX Magnesium chelatase, ChlI sub...   210  2e-53

>gb|AAK72264.1|AC084767_4 putative chelatase subunit [Oryza sativa (japonica cultivar-group)]
          Length = 415

 Score =  215 bits (548), Expect = 4e-55
 Identities = 114/186 (61%), Positives = 134/186 (71%), Gaps = 10/186 (5%)
 Frame = +2

Query: 152 AFTAVRQGRAGPLRTRLVVRSSVALPST----------KAAKKPNFPFVKIQGQEEMKLA 301
           A +A    R G  R R  V  +VA PS           K +++P +PF  I GQ+EMKL 
Sbjct: 35  AVSARIPSRRGFRRGRFTV-CNVAAPSATQQEAKAAGAKESQRPVYPFAAIVGQDEMKLC 93

Query: 302 LLLNVVDPNIGGVLIMGDRGTAKSVAVRALVDMLPDIDVVEGDAFNSSPTDPKFMGPDTL 481
           LLLNV+DP IGGV+IMGDRGT KS  VR+LVD+LPDI VV GD FNS P DP+ MGP+  
Sbjct: 94  LLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPDIRVVVGDPFNSDPDDPEVMGPEVR 153

Query: 482 QRFRNGEKLPTVRMRTPLVELPLGATEDRICGTIDIEKALTQGIKAYEPGLLAKANRGIL 661
           +R   GEKLP V  +  +V+LPLGATEDR+CGTIDIEKALT G+KA+EPGLLAKANRGIL
Sbjct: 154 ERVLEGEKLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGIL 213

Query: 662 YVDEVN 679
           YVDEVN
Sbjct: 214 YVDEVN 219

>ref|NP_683790.1| Mg-protoporyphyrin IX chelatase [Chaetosphaeridium globosum]
           gi|22416908|gb|AAM96508.1| magnesium chelatase subunit
           of   protochlorophyllide reductase [Chaetosphaeridium
           globosum]
          Length = 354

 Score =  213 bits (541), Expect = 3e-54
 Identities = 102/145 (70%), Positives = 121/145 (83%)
 Frame = +2

Query: 245 KKPNFPFVKIQGQEEMKLALLLNVVDPNIGGVLIMGDRGTAKSVAVRALVDMLPDIDVVE 424
           ++P FPF  I GQEEMKLALLLNV+DP IGGV+IMGDRGT KS  VRALVD+LP+I+VVE
Sbjct: 10  ERPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIEVVE 69

Query: 425 GDAFNSSPTDPKFMGPDTLQRFRNGEKLPTVRMRTPLVELPLGATEDRICGTIDIEKALT 604
            DAFNS P DP+ M      + +N EK+ T+R +  +V+LPLGATEDR+CGTIDIEKALT
Sbjct: 70  DDAFNSDPRDPELMSEYVRNKVKNNEKISTIRTKINMVDLPLGATEDRVCGTIDIEKALT 129

Query: 605 QGIKAYEPGLLAKANRGILYVDEVN 679
           +G+KA+EPGLLAKANRGILYVDEVN
Sbjct: 130 EGVKAFEPGLLAKANRGILYVDEVN 154

>ref|NP_050837.1| Mg-protoporyphyrin IX chelatase [Nephroselmis olivacea]
           gi|12229764|sp|Q9TL08|CHLI_NEPOL Magnesium-chelatase
           subunit chlI (Mg-protoporphyrin IX chelatase)
           gi|5880715|gb|AAD54808.1|AF137379_31 magnesium chelatase
           subunit of protochlorophyllide reductase [Nephroselmis
           olivacea]
          Length = 355

 Score =  211 bits (536), Expect = 1e-53
 Identities = 101/150 (67%), Positives = 120/150 (79%)
 Frame = +2

Query: 230 STKAAKKPNFPFVKIQGQEEMKLALLLNVVDPNIGGVLIMGDRGTAKSVAVRALVDMLPD 409
           +T    +P FPF  I GQEEMKLALLLNV+DP IGGV+IMGDRGT KS  VRALVD+LP+
Sbjct: 6   TTSEQARPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPE 65

Query: 410 IDVVEGDAFNSSPTDPKFMGPDTLQRFRNGEKLPTVRMRTPLVELPLGATEDRICGTIDI 589
           I+VVE D FNS P DP+ M  +  ++   GE + T   + P+V+LPLGATEDR+CGTIDI
Sbjct: 66  IEVVENDPFNSHPYDPELMSDEVREKVHRGESIRTTTTKIPMVDLPLGATEDRVCGTIDI 125

Query: 590 EKALTQGIKAYEPGLLAKANRGILYVDEVN 679
           EKALT+G+KA+EPGLLAKANRGILYVDEVN
Sbjct: 126 EKALTEGVKAFEPGLLAKANRGILYVDEVN 155

>ref|NP_193583.1| magnesium-chelatase, subunit chlI, chloroplast (Mg-protoporphyrin
           IX chelatase) (CHLI) [Arabidopsis thaliana]
           gi|117238|sp|P16127|CHLI_ARATH Magnesium-chelatase
           subunit chlI, chloroplast precursor (Mg-protoporphyrin
           IX chelatase) (Protein CS/CH-42) gi|81656|pir||S12785
           protein ch-42 precursor, chloroplast - Arabidopsis
           thaliana gi|1020100|emb|CAA62754.1| protoporphyrin-IX
           Mg-chetalase [Arabidopsis thaliana]
           gi|2832653|emb|CAA16728.1| protein ch-42 precursor,
           chloroplast [Arabidopsis thaliana]
           gi|4490290|emb|CAB38561.1| unnamed protein product
           [Arabidopsis thaliana] gi|7268641|emb|CAB78850.1|
           protein ch-42 precursor, chloroplast [Arabidopsis
           thaliana] gi|20260586|gb|AAM13191.1| protein ch-42
           precursor, chloroplast [Arabidopsis thaliana]
           gi|33589664|gb|AAQ22598.1| At4g18480 [Arabidopsis
           thaliana] gi|228771|prf||1811226A ccsA gene
          Length = 424

 Score =  210 bits (535), Expect = 1e-53
 Identities = 98/149 (65%), Positives = 123/149 (81%)
 Frame = +2

Query: 233 TKAAKKPNFPFVKIQGQEEMKLALLLNVVDPNIGGVLIMGDRGTAKSVAVRALVDMLPDI 412
           +K + +P +PF  I GQ+EMKL LLLNV+DP IGGV+IMGDRGT KS  VR+LVD+LP+I
Sbjct: 80  SKKSARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEI 139

Query: 413 DVVEGDAFNSSPTDPKFMGPDTLQRFRNGEKLPTVRMRTPLVELPLGATEDRICGTIDIE 592
           +VV GD +NS P DP+FMG +  +R   GE++P +  +  +V+LPLGATEDR+CGTIDIE
Sbjct: 140 NVVAGDPYNSDPIDPEFMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIE 199

Query: 593 KALTQGIKAYEPGLLAKANRGILYVDEVN 679
           KALT+G+KA+EPGLLAKANRGILYVDEVN
Sbjct: 200 KALTEGVKAFEPGLLAKANRGILYVDEVN 228

>ref|NP_894966.1| Protoporphyrin IX Magnesium chelatase, ChlI subunit
           [Prochlorococcus marinus str. MIT 9313]
           gi|33640855|emb|CAE21310.1| Protoporphyrin IX Magnesium
           chelatase, ChlI subunit [Prochlorococcus marinus str.
           MIT 9313]
          Length = 363

 Score =  210 bits (534), Expect = 2e-53
 Identities = 100/145 (68%), Positives = 118/145 (80%)
 Frame = +2

Query: 245 KKPNFPFVKIQGQEEMKLALLLNVVDPNIGGVLIMGDRGTAKSVAVRALVDMLPDIDVVE 424
           K+  FPF  + GQEEMKLALLLNV+DP IGGV+IMGDRGT KS A+RAL D+LP IDVV 
Sbjct: 6   KRRVFPFTSVIGQEEMKLALLLNVIDPRIGGVMIMGDRGTGKSTAIRALADLLPGIDVVA 65

Query: 425 GDAFNSSPTDPKFMGPDTLQRFRNGEKLPTVRMRTPLVELPLGATEDRICGTIDIEKALT 604
           GD +NSSPTDP     D  QR  +GE L T   + P+V+LPLGATEDR+CGTIDIEKAL+
Sbjct: 66  GDPYNSSPTDPDLQSSDVRQRIEHGESLATEERQVPMVDLPLGATEDRLCGTIDIEKALS 125

Query: 605 QGIKAYEPGLLAKANRGILYVDEVN 679
           +G++A+EPGLLAKANRG+LYVDEVN
Sbjct: 126 EGVRAFEPGLLAKANRGLLYVDEVN 150



EST assemble image


clone accession position
1 LC061e12_r AV623288 1 527
2 MX245g03_r BP091885 23 446
3 CM100c04_r AV392844 32 548
4 MX207e09_r BP089449 252 681




Chlamydomonas reinhardtii
Kazusa DNA Research Institute