KCC001782A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001782A_C01 KCC001782A_c01
gCATGTGTCTTATTTACACAGGAAGCAAACATGTTGCGATGTGTGCACCCGCCACAATCA
TTAATGCGTGCTTGCAGCCCCCGCTAGCCCAGCATGCACGCCCCGCTTGCAACACCTCTA
GCAGCCTCGCAGGGGCATTCGTGTGATGCCGACATGGCATTCATTCCACGGTTCGCACCC
TGCCCACAAGCACATCCGGTACTGACCAACGCGGCCACAACACACATGTAGGCCTGGTCT
GTCCCGTCTGCTGCTGGGCCAGTGTTCAGACAGCTCGACAGGTGGCACGGAACGCTAGCC
AGCTCACATCCGTCCCATGTAACGCACGGCACGCCGCAGCGGTTGCTTGCCCCAGCACAG
CGAAACAGGGCGCGACGGCGGCCTCGCATGGGGCTGCACCTGCTGCACCTGCTGCACCTG
CGCCCGCGGCGCGTTCAGCTTGCCGCTGCGGTTGGGCAGCGGGCGGTTGTAGGTCTTGGT
CAGCACCTCGCTGACGCGACCACTGCTCAGGGACTCGTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001782A_C01 KCC001782A_c01
         (522 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_214800.1| PPE [Mycobacterium tuberculosis H37Rv] gi|15839...    41  0.011
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir...    40  0.014
dbj|BAC29860.1| unnamed protein product [Mus musculus]                 40  0.024
ref|XP_146155.2| mucin 5, subtype B, tracheobronchial [Mus muscu...    40  0.024
ref|NP_083077.1| mucin 5, subtype B, tracheobronchial [Mus muscu...    40  0.024

>ref|NP_214800.1| PPE [Mycobacterium tuberculosis H37Rv] gi|15839672|ref|NP_334709.1|
           PPE family protein [Mycobacterium tuberculosis CDC1551]
           gi|31791465|ref|NP_853958.1| PPE FAMILY PROTEIN
           [Mycobacterium bovis subsp. bovis AF2122/97]
           gi|7478749|pir||D70836 probable PPE protein -
           Mycobacterium tuberculosis (strain H37RV)
           gi|2909475|emb|CAA17361.1| PPE [Mycobacterium
           tuberculosis H37Rv] gi|13879793|gb|AAK44523.1| PPE
           family protein [Mycobacterium tuberculosis CDC1551]
           gi|31617051|emb|CAD93158.1| PPE FAMILY PROTEIN
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 513

 Score = 40.8 bits (94), Expect = 0.011
 Identities = 20/49 (40%), Positives = 26/49 (52%)
 Frame = +3

Query: 333 AAAVACPSTAKQGATAASHGAAPAAPAAPAPAARSACRCGWAAGGCRSW 479
           A ++A       GA   + GAAP+A AAPAPAA +     +A GG   W
Sbjct: 322 AVSMAVTGAGTAGAATPAAGAAPSAGAAPAPAAPATASFAYAVGGSGDW 370

>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
          Length = 3326

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 45/124 (36%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +3

Query: 72   LQPPLAQHARPACNTSSSLAGAFV*CRHGIHSTVRTLPTSTSGTDQRGHNTHVGLVCPVC 251
            LQ P  + ARPA  + ++LA          H      PT TS T      T      P  
Sbjct: 2774 LQRPRRRAARPAVGSLTNLADP--------HPPGPETPTPTSPTANPHATTASATPAPPP 2825

Query: 252  CWASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGAAPAAPAAP-APA 428
              A+  T     R  S  T  P  A    A A P+ A   A AA   AAPAAPAAP APA
Sbjct: 2826 VAATGPT-----RPTSPATPTPTVAAAGRASAPPAPAAPAAPAAP--AAPAAPAAPAAPA 2878

Query: 429  ARSA 440
            A +A
Sbjct: 2879 APAA 2882

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 26/63 (41%), Positives = 29/63 (45%)
 Frame = +3

Query: 243  PVCCWASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGAAPAAPAAPA 422
            P    A    A   A  A    +VP      AA A P+     A  A+  AAPAAPAAPA
Sbjct: 2913 PAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAP-AAPAAPAAPA 2971

Query: 423  PAA 431
            PAA
Sbjct: 2972 PAA 2974

 Score = 34.7 bits (78), Expect = 0.77
 Identities = 28/73 (38%), Positives = 31/73 (42%)
 Frame = +3

Query: 243  PVCCWASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGAAPAAPAAPA 422
            P    A    A   A  A    + P      AA A P+     A  A+  AAPAAPAAPA
Sbjct: 2874 PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAP-AAPAAPAAPA 2932

Query: 423  PAARSACRCGWAA 461
            PAA  A     AA
Sbjct: 2933 PAAVPAAPAAPAA 2945

 Score = 32.7 bits (73), Expect = 2.9
 Identities = 28/82 (34%), Positives = 32/82 (38%)
 Frame = +3

Query: 243  PVCCWASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGAAPAAPAAPA 422
            P    A    A   A  A    + P      AA A P+     A  A+  AAPAAPAAPA
Sbjct: 2892 PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAP-AAPAAPAAPA 2950

Query: 423  PAARSACRCGWAAGGCRSWSAP 488
              A  A     AA    +  AP
Sbjct: 2951 APAAPAAPAAPAAPAAPAAPAP 2972

 Score = 31.6 bits (70), Expect = 6.5
 Identities = 27/77 (35%), Positives = 31/77 (40%)
 Frame = +3

Query: 258  ASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGAAPAAPAAPAPAARS 437
            A    A   A  A    + P      AA A P+     A  A+  AAPAAPAAPA  A  
Sbjct: 2858 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAP-AAPAAPAAPAAPAAP 2916

Query: 438  ACRCGWAAGGCRSWSAP 488
            A     AA    +  AP
Sbjct: 2917 AAPAAPAAPAAPAAPAP 2933

 Score = 31.2 bits (69), Expect = 8.5
 Identities = 25/68 (36%), Positives = 29/68 (41%), Gaps = 2/68 (2%)
 Frame = +3

Query: 243  PVCCWASVQTARQVARNASQLTSVPCNARHAAAVACPSTAKQGATAASHGA--APAAPAA 416
            P    A    A   A  A    + P  A   AA A P+     A  A+  A  APAAPAA
Sbjct: 2907 PAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2966

Query: 417  PAPAARSA 440
            PA  A +A
Sbjct: 2967 PAAPAPAA 2974

>dbj|BAC29860.1| unnamed protein product [Mus musculus]
          Length = 1477

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 1/131 (0%)
 Frame = -2

Query: 398  CSPMRGRRRALFRCAGASNRCGVPCVTWDGCELASVPCHLSSCLNTGPAADGTDQAYMCV 219
            CS   G+   L      S  C  P V  D C  ASV  H + CL +    D    +  CV
Sbjct: 778  CSCTNGKLTCLGALMQKSTECQAPMVYLD-CNNASVGHHGAECLKSCHTLDVECFSTQCV 836

Query: 218  VAALVSTGCACGQG-ANRGMNAMSASHECPCEAARGVASGACMLG*RGLQARINDCGGCT 42
                  +GC C  G    G     A  +CPC           ++       R+ DC  CT
Sbjct: 837  ------SGCVCPSGLVADGNGGCIAEEDCPCIHNEVTYRPGEII-------RV-DCNNCT 882

Query: 41   HRNMFASCVNK 9
             +N    C NK
Sbjct: 883  CKNRRWECTNK 893

>ref|XP_146155.2| mucin 5, subtype B, tracheobronchial [Mus musculus]
          Length = 4782

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 1/131 (0%)
 Frame = -2

Query: 398  CSPMRGRRRALFRCAGASNRCGVPCVTWDGCELASVPCHLSSCLNTGPAADGTDQAYMCV 219
            CS   G+   L      S  C  P V  D C  ASV  H + CL +    D    +  CV
Sbjct: 778  CSCTNGKLTCLGALMQKSTECQAPMVYLD-CNNASVGHHGAECLKSCHTLDVECFSTQCV 836

Query: 218  VAALVSTGCACGQG-ANRGMNAMSASHECPCEAARGVASGACMLG*RGLQARINDCGGCT 42
                  +GC C  G    G     A  +CPC           ++       R+ DC  CT
Sbjct: 837  ------SGCVCPSGLVADGNGGCIAEEDCPCIHNEVTYRPGEII-------RV-DCNNCT 882

Query: 41   HRNMFASCVNK 9
             +N    C NK
Sbjct: 883  CKNRRWECTNK 893

>ref|NP_083077.1| mucin 5, subtype B, tracheobronchial [Mus musculus]
            gi|20873290|emb|CAC84569.1| Muc5b protein [Mus musculus]
          Length = 4782

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 1/131 (0%)
 Frame = -2

Query: 398  CSPMRGRRRALFRCAGASNRCGVPCVTWDGCELASVPCHLSSCLNTGPAADGTDQAYMCV 219
            CS   G+   L      S  C  P V  D C  ASV  H + CL +    D    +  CV
Sbjct: 778  CSCTNGKLTCLGALMQKSTECQAPMVYLD-CNNASVGHHGAECLKSCHTLDVECFSTQCV 836

Query: 218  VAALVSTGCACGQG-ANRGMNAMSASHECPCEAARGVASGACMLG*RGLQARINDCGGCT 42
                  +GC C  G    G     A  +CPC           ++       R+ DC  CT
Sbjct: 837  ------SGCVCPSGLVADGNGGCIAEEDCPCIHNEVTYRPGEII-------RV-DCNNCT 882

Query: 41   HRNMFASCVNK 9
             +N    C NK
Sbjct: 883  CKNRRWECTNK 893



EST assemble image


clone accession position
1 MXL069c07_r BP097054 1 439
2 CM099b09_r AV393100 2 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute