KCC001771A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001771A_C01 KCC001771A_c01
CCGATCTCGACATCGATGACCCGACCATTCATCCGACCTTGCTCTCAAGCACGAGCTATT
GCAAGAATTTCTTGCAACATGCACGGTTTCATTCTGATCATCTGCGTTGTTGCAGCTTGC
CTGCAAGCATGCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG
GTCGTGAGTGGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTG
CATCCTGCCAACCTGGAGCGTCCTACTGCTGGATATGGTTTTCGGGATTGGATTGGGCAT
AACCGGAGTGACATCTTACTGCGTGCGTTGCCTGACAACGGGTCGTATTCTGAACATGAT
GCGGTTGTTTTTGTTTCTCCTGAATATGATATTCCGACGATGCTGGCCTTTGTGAACCGG
TCGAATCCGCGCACAATTGTACTCACATGTCATGGGGGTTGTTCAACTTTTGTCAAGGGC
ACGGCTGTATCAACCTTAGAAACGGCTAAAAGGTCGGTGCATTTTGTGGCACTTGCACCT
CACGCAGCTGTCCATGCATCTCAAGTTTTAAAGCGTCGTGTCCATTGGGTATTGCCTATC
CTTCCTTTAAATCCTCACCGTGTCTGCAGTTGGGAAGCTGACATGTTTCCGCCACTTATG
TCACGAAGTATTGTCCAAGAACCATGTTTGTCAGGCTTCGCGATTCAAGGCCAGCTTCGT
CTTGAGCGACGCGACTACATGATGTTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTT
TCAAAGCATCCGAGGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAAC
ATTACGGCTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001771A_C01 KCC001771A_c01
         (850 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_151971.1| hypothetical protein XP_151971 [Mus musculus]         34  3.4
pir||JP0076 nel protein - chicken                                      34  3.4
ref|NP_241499.1| phosphoribosylaminoimidazolecarboxamide formylt...    34  3.4
sp|Q90827|NEL_CHICK NEL PROTEIN PRECURSOR (93 KD PROTEIN) gi|148...    34  3.4
ref|NP_648056.1| CG10107-PA [Drosophila melanogaster] gi|2309406...    33  5.9

>ref|XP_151971.1| hypothetical protein XP_151971 [Mus musculus]
          Length = 237

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 19/48 (39%), Positives = 25/48 (51%)
 Frame = +1

Query: 250 NLERPTAGYGFRDWIGHNRSDILLRALPDNGSYSEHDAVVFVSPEYDI 393
           NL RP   +   D++  +RS I L  LPDNG    H    FV+P  D+
Sbjct: 157 NLPRPVT-HRLDDFVTVHRSFIELNQLPDNGRLGSHHGSEFVTPADDV 203

>pir||JP0076 nel protein - chicken
          Length = 835

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 23/68 (33%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
 Frame = +3

Query: 414 EPVESAHNCTHMSWGLFNFCQGHGCI----NLRNG*KVGAFCGTCTSRSCPCISSFKASC 581
           E V + HNC   +   FN   GH C+       NG    AFC         CI+S   +C
Sbjct: 485 ECVTNQHNCDENAL-CFNTVGGHNCVCKLGYTGNGTVCKAFCKDGCRNGGACIASNVCAC 543

Query: 582 PLGIAYPS 605
           P G   PS
Sbjct: 544 PQGFTGPS 551

>ref|NP_241499.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Bacillus halodurans]
           gi|20139777|sp|Q9KF53|PUR9_BACHD Bifunctional purine
           biosynthesis protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (AICAR transformylase); IMP
           cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
           gi|25286232|pir||A83729
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/ IMP cyclohydrolase purH [imported] -
           Bacillus halodurans  (strain C-125)
           gi|10173247|dbj|BAB04352.1|
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase [Bacillus
           halodurans]
          Length = 511

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
 Frame = +1

Query: 454 GGCSTFVKGTAVSTLETAKRSVHFVALAPHAAVHASQVLKRRVHWVLPILPLNPHRVCSW 633
           GG     +   V T +T K     + +AP  +  A  VL  + +  L  LPLN       
Sbjct: 303 GGIIALNREVDVETAKTLKEIFLEIIIAPSFSEEALDVLTSKKNLRLLTLPLNEENQAE- 361

Query: 634 EADMFPPLMSRSIVQEPCLSGF-AIQGQLRLERRDYMMLWRDIEANWDVVSKHPRFNVTI 810
                  +   ++VQE    GF   + ++  +R      W  ++  W VV KH + N  +
Sbjct: 362 --KRITSIHGGALVQEEDTYGFEEAEIKIPTKREPTEAEWEALKLAWRVV-KHVKSNAIV 418

Query: 811 LGSGRLS 831
           L  G+++
Sbjct: 419 LADGQMT 425

>sp|Q90827|NEL_CHICK NEL PROTEIN PRECURSOR (93 KD PROTEIN) gi|1483184|dbj|BAA13167.1| Mr
           93 K protein [Gallus gallus]
          Length = 816

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 23/68 (33%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
 Frame = +3

Query: 414 EPVESAHNCTHMSWGLFNFCQGHGCI----NLRNG*KVGAFCGTCTSRSCPCISSFKASC 581
           E V + HNC   +   FN   GH C+       NG    AFC         CI+S   +C
Sbjct: 485 ECVTNQHNCDENAL-CFNTVGGHNCVCKLGYTGNGTVCKAFCKDGCRNGGACIASNVCAC 543

Query: 582 PLGIAYPS 605
           P G   PS
Sbjct: 544 PQGFTGPS 551

>ref|NP_648056.1| CG10107-PA [Drosophila melanogaster] gi|23094061|gb|AAF50646.3|
           CG10107-PA [Drosophila melanogaster]
          Length = 1833

 Score = 33.1 bits (74), Expect = 5.9
 Identities = 24/102 (23%), Positives = 48/102 (46%)
 Frame = -1

Query: 409 RPASSEYHIQEKQKQPHHVQNTTRCQATHAVRCHSGYAQSNPENHIQQ*DAPGWQDARKR 230
           +P +   H+Q+++KQ   +Q   + Q  +     +   QS+P+   Q       Q ++++
Sbjct: 177 QPNAIVQHMQQQKKQQQVLQQQQQQQQQYQQHAPAYQVQSSPQGQAQL-----LQSSQQQ 231

Query: 229 SGV*KEAPTHECNHSRPPSESQEYLPKQHLTYRMLAGKLQQR 104
               ++A T +   S P  + Q++   Q + YRM   + QQR
Sbjct: 232 HQQAQQAQTLQLQTSPPQQQPQQH---QQIVYRMTTTQQQQR 270



EST assemble image


clone accession position
1 HC046f09_r AV635465 1 541
2 MX221b04_r BP090256 173 564
3 LC013e04_r AV619808 196 638
4 LCL090c03_r AV631207 242 680
5 LC056e10_r AV622920 283 774
6 LC019c12_r AV620232 283 798
7 HC032g09_r AV634392 430 810
8 LC096c11_r AV625676 447 850
9 CM096d04_r AV392778 485 954




Chlamydomonas reinhardtii
Kazusa DNA Research Institute