KCC001764A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001764A_C01 KCC001764A_c01
AACCATATGCACTTAGCCTTTAGCCTGTGCATTTGCCGTGAGACGGCTGTGCTCGCCACC
TTCGCGAACGACGGACAACGCAGCGGTCCTGGTCTAAAATCACTTAACTTAGCCGACAGA
AAATCCCAACAACCAATACTTGCTGCATAATTTCACTAAGCCAGTTACCGCGTATCAGAA
GCGAGTCACAACACGCAAAAGCCCCGCGATGGGGCAGGCATTCACGAAGCTGTTTGACAG
ATGGTTTGGGAACAGGGAGATGCGCGTGGTGATGCTGGGCCTGGACGCGGCAGGAAAGAC
CACCATCCTCTACAAGCTTCACATCGGCGAGGTGCTCACCACTGTGCCGACTATCGGCTT
CAACGTTGAGAAGGTGCAATACAAGAACGTTGTGTTCACGGTGTGGGACGTGGGCGGCCA
GGAGAAGCTGCGGCCACTGTGGCGGCATTACTTCAACAACACGGATGGGCTCATCTTCGT
GGTGGACAGCCAGGACCGCGACCGCATCGGCAAGGCGGCGCAGGAGTTCCAGGCCATCCT
GCAGGACCCGCTGATGCTGCACAGCGCCATCCTGGTGTTCGCCAACAAGCAGGACATGAA
GGGCTGCCTCACGCCCGCCGAGGTGTGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001764A_C01 KCC001764A_c01
         (630 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197208.1| ADP-ribosylation factor, putative [Arabidopsis ...   249  2e-65
ref|NP_186962.1| ADP-ribosylation factor, putative [Arabidopsis ...   248  4e-65
gb|AAG46163.1|AC018727_15 putative ADP-ribosylation factor [Oryz...   248  7e-65
dbj|BAA92725.1| Similar to Drosophila melanogaster ADP-ribosylat...   213  2e-54
sp|P34727|ARF_AJECA ADP-ribosylation factor gi|1362500|pir||D499...   201  9e-51

>ref|NP_197208.1| ADP-ribosylation factor, putative [Arabidopsis thaliana]
           gi|11274595|pir||T51561 ADP-ribosylation factor-like
           protein - Arabidopsis thaliana
           gi|9755707|emb|CAC01719.1| ADP-ribosylation factor-like
           protein [Arabidopsis thaliana]
           gi|20260664|gb|AAM13230.1| ADP-ribosylation factor-like
           protein [Arabidopsis thaliana]
           gi|21554981|gb|AAM63746.1| ADP-ribosylation factor-like
           protein [Arabidopsis thaliana]
           gi|28059525|gb|AAO30066.1| ADP-ribosylation factor-like
           protein [Arabidopsis thaliana]
          Length = 192

 Score =  249 bits (636), Expect = 2e-65
 Identities = 119/140 (85%), Positives = 131/140 (93%)
 Frame = +2

Query: 209 MGQAFTKLFDRWFGNREMRVVMLGLDAAGKTTILYKLHIGEVLTTVPTIGFNVEKVQYKN 388
           MGQAF KLFD +FGN+EMRVVMLGLDAAGKTTILYKLHIGEVL+TVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 389 VVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSA 568
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLI+VVDS DR+RIGKA QEFQ I++DP ML+S 
Sbjct: 61  VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQEIIKDPFMLNSI 120

Query: 569 ILVFANKQDMKGCLTPAEVC 628
           ILVFANKQDM+G ++P EVC
Sbjct: 121 ILVFANKQDMRGAMSPREVC 140

>ref|NP_186962.1| ADP-ribosylation factor, putative [Arabidopsis thaliana]
           gi|6714424|gb|AAF26112.1|AC012328_15 putative
           ADP-ribosylation factor [Arabidopsis thaliana]
           gi|21537228|gb|AAM61569.1| putative ADP-ribosylation
           factor [Arabidopsis thaliana] gi|28393278|gb|AAO42067.1|
           putative ADP-ribosylation factor [Arabidopsis thaliana]
           gi|28827546|gb|AAO50617.1| putative ADP-ribosylation
           factor [Arabidopsis thaliana]
          Length = 192

 Score =  248 bits (634), Expect = 4e-65
 Identities = 118/140 (84%), Positives = 130/140 (92%)
 Frame = +2

Query: 209 MGQAFTKLFDRWFGNREMRVVMLGLDAAGKTTILYKLHIGEVLTTVPTIGFNVEKVQYKN 388
           MGQ F KLFD +FGN+EMRVVMLGLDAAGKTTILYKLHIGEVL+TVPTIGFNVEKVQYKN
Sbjct: 1   MGQTFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 389 VVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSA 568
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLI+VVDS DR+RIGKA QEFQ I++DP ML+S 
Sbjct: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQDIIRDPFMLNSV 120

Query: 569 ILVFANKQDMKGCLTPAEVC 628
           ILVFANKQDM+G ++P EVC
Sbjct: 121 ILVFANKQDMRGAMSPREVC 140

>gb|AAG46163.1|AC018727_15 putative ADP-ribosylation factor [Oryza sativa]
           gi|31433708|gb|AAP55187.1| putative ADP-ribosylation
           factor [Oryza sativa (japonica cultivar-group)]
          Length = 192

 Score =  248 bits (632), Expect = 7e-65
 Identities = 118/140 (84%), Positives = 129/140 (91%)
 Frame = +2

Query: 209 MGQAFTKLFDRWFGNREMRVVMLGLDAAGKTTILYKLHIGEVLTTVPTIGFNVEKVQYKN 388
           MGQAF KLFD +FGN+EMRVVMLGLDAAGKTTILYKLHIGEVL+TVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDAFFGNKEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 389 VVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSA 568
           VVFTVWDVGGQEKLRPLWRHYFNNTD LI+VVDS DR+RIG+A  EFQAI+ DP ML+S 
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDALIYVVDSLDRERIGRARAEFQAIINDPFMLNSV 120

Query: 569 ILVFANKQDMKGCLTPAEVC 628
           +LVFANKQDM+G +TP EVC
Sbjct: 121 LLVFANKQDMRGAMTPMEVC 140

>dbj|BAA92725.1| Similar to Drosophila melanogaster ADP-ribosylation factor 1
           (A49520) [Oryza sativa (japonica cultivar-group)]
          Length = 189

 Score =  213 bits (541), Expect = 2e-54
 Identities = 101/140 (72%), Positives = 122/140 (87%)
 Frame = +2

Query: 209 MGQAFTKLFDRWFGNREMRVVMLGLDAAGKTTILYKLHIGEVLTTVPTIGFNVEKVQYKN 388
           MGQ+  KLFD  F  +EM+V+MLGLDAAGKTTILY+LHIGEVL+++PTIGFNVEKV+YKN
Sbjct: 1   MGQSLRKLFDS-FCTKEMKVLMLGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKN 59

Query: 389 VVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSA 568
           V FTVWDVGGQ+KLRPLWR YF N D LI+VVDS DR+RIG A +EFQAI++DPLML+S 
Sbjct: 60  VAFTVWDVGGQDKLRPLWRQYFRNADALIYVVDSMDRERIGVAKEEFQAIIRDPLMLNSV 119

Query: 569 ILVFANKQDMKGCLTPAEVC 628
           IL+ ANKQD+KG ++ +EVC
Sbjct: 120 ILLLANKQDLKGAMSSSEVC 139

>sp|P34727|ARF_AJECA ADP-ribosylation factor gi|1362500|pir||D49993 ADP-ribosylation
           factor - Ajellomyces capsulata gi|407693|gb|AAA17548.1|
           ADP-ribosylation factor
          Length = 183

 Score =  201 bits (510), Expect = 9e-51
 Identities = 90/139 (64%), Positives = 117/139 (83%)
 Frame = +2

Query: 209 MGQAFTKLFDRWFGNREMRVVMLGLDAAGKTTILYKLHIGEVLTTVPTIGFNVEKVQYKN 388
           MG AF+KLFDR +G +EMR++M+GLDAAGKTTILYKL +GE++TT+PTIGFNVE V+YKN
Sbjct: 1   MGMAFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 389 VVFTVWDVGGQEKLRPLWRHYFNNTDGLIFVVDSQDRDRIGKAAQEFQAILQDPLMLHSA 568
           + FTVWDVGGQ+K+RPLWRHYF NT G+IFVVDS DRDR+ +A +E Q +L +  +  + 
Sbjct: 61  IQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDAL 120

Query: 569 ILVFANKQDMKGCLTPAEV 625
           +LVFANKQD+   ++PAE+
Sbjct: 121 LLVFANKQDLPNAMSPAEI 139



EST assemble image


clone accession position
1 LC042d03_r AV621898 1 595
2 LC078d02_r AV624483 120 582
3 CM094d01_r AV393253 214 741




Chlamydomonas reinhardtii
Kazusa DNA Research Institute