KCC001759A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001759A_C01 KCC001759A_c01
gtctcgagttttttttttttttttttgtcCAGGCGCCTTTACACACGCGGCAGCACAGGA
CGCGCACGAGCGCAACACTCCTGGGGCTGCGCCTGACTACGCGCGTTCCGCCAAACCAAC
CTTGCACAGCACAGCTCACGGAATCAATAGCATTGGGGCCTCAGCATGCACCTTCGGTAG
AATGCTGTCCCCAACTAACAACATTTGGGCACACCTGAGTCTGTTGGTCACCACTCAAGG
ATGGATCCACCCACATTCCGCGACAAGACAAAACTGCGGGCACACTACGCCCGTACACGA
TACCAAAACTAAATGATATGACCTACCTACGCGATTACACCTCGCAGATCTGGCACGACC
GGCCCTACTCAACCTGCTCTCAATTCTCCGTGGCCCATGCATCATGGCAAACTGACTCTC
TTTGCCACCTGCCACCGCTGTAAATGCTGCCACCGGGTGGGCTTAAATTGCACCACACCG
GACCGTCCGAACCTCCTGGAAAGCGCACCAGACCTCTCCTTTCAACACTCTCCTCTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001759A_C01 KCC001759A_c01
         (538 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO38155.1| dissimilatory sulfite reductase beta subunit [unc...    36  0.37
dbj|BAB63745.1| P0694A04.30 [Oryza sativa (japonica cultivar-gro...    33  2.4
dbj|BAB85364.1| cytokinin synthase -like protein [Oryza sativa (...    33  2.4
gb|AAO38157.1| dissimilatory sulfite reductase beta subunit [unc...    33  2.4
gb|AAO38165.1| dissimilatory sulfite reductase beta subunit [unc...    33  2.4

>gb|AAO38155.1| dissimilatory sulfite reductase beta subunit [uncultured
           sulfate-reducing bacterium]
          Length = 243

 Score = 35.8 bits (81), Expect = 0.37
 Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
 Frame = +2

Query: 191 PTNNIWAHLSLLVTTQGWIHPHSATRQNCGHTTPVHDTKTK*Y----DLPTRLHLA 346
           P   + + LS +V TQGW+H HSA     G  T V D     +    DLP ++ +A
Sbjct: 112 PIGGLGSKLSNIVHTQGWVHCHSAASDASGVVTSVMDKLFPYFSGEKDLPAKMRVA 167

>dbj|BAB63745.1| P0694A04.30 [Oryza sativa (japonica cultivar-group)]
           gi|18844790|dbj|BAB85260.1| P0684E06.5 [Oryza sativa
           (japonica cultivar-group)]
          Length = 118

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 21/56 (37%), Positives = 23/56 (40%)
 Frame = +2

Query: 32  GAFTHAAAQDAHERNTPGAAPDYARSAKPTLHSTAHGINSIGASACTFGRMLSPTN 199
           GA TH     A       + PD  RS +  L  TA   N  GA  CT GR L   N
Sbjct: 63  GAETHMRRSPAAPTRLARSPPDEERSQRDQLLGTASQRNPRGADTCTGGRHLDQKN 118

>dbj|BAB85364.1| cytokinin synthase -like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 427

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = -2

Query: 534 RRVLKGEV--WCAFQEVRTVRCGAI*AHPVAAFTAVAGGKESQFAMMHGPRRIESRLSRA 361
           RR+  GE   W  F     ++   +   P+AA      G++  FA    PRR+  R+ R+
Sbjct: 36  RRLGLGECFGWAGFMSSLGLKIRTVVRSPMAAAAVAGVGRDGSFASQKRPRRVSVRMERS 95

Query: 360 GRARSARCNRVGR 322
                  C+  GR
Sbjct: 96  RVGDGCCCSCSGR 108

>gb|AAO38157.1| dissimilatory sulfite reductase beta subunit [uncultured
           sulfate-reducing bacterium]
          Length = 246

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 19/55 (34%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
 Frame = +2

Query: 191 PTNNIWAHLSLLVTTQGWIHPHSATRQNCGHTTPVHDTKTK*Y---DLPTRLHLA 346
           P   I   +S +V TQGW+H HSA     G    + D     +   DLP +L +A
Sbjct: 113 PVGGIGNSISNIVHTQGWVHCHSAATDASGVVKSIMDELFPHFVNMDLPGKLRIA 167

>gb|AAO38165.1| dissimilatory sulfite reductase beta subunit [uncultured
           sulfate-reducing bacterium]
          Length = 243

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 4/56 (7%)
 Frame = +2

Query: 191 PTNNIWAHLSLLVTTQGWIHPHSATRQNCGHTTPVHDTKTK*Y----DLPTRLHLA 346
           P   + + LS +V TQGW+H HSA     G    V D     +    DLP +  +A
Sbjct: 112 PIGGLGSKLSNIVHTQGWVHCHSAASDASGVVKSVMDVLFPYFSGEKDLPAKTRIA 167



EST assemble image


clone accession position
1 HCL080g05_r AV644042 1 510
2 CM093d04_r AV392966 27 539
3 LCL020h04_r AV627086 28 221
4 MX245f10_r BP091883 30 519
5 LC062d05_r AV623344 51 528
6 LCL027c05_r AV627472 230 518




Chlamydomonas reinhardtii
Kazusa DNA Research Institute