KCC001757A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001757A_C01 KCC001757A_c01
gatagaagcttcctggtcgcttGTAGACGTGACCCTCGGAAGTGAGTTCGTTTCGGACAT
TTCAGCCCCTCGCTTGCAACCACGCAACCTGCCGAGGTTAAGACAACACTGCCTATACTT
CCAGGCAACAGCACCACGCCGTCGACCCTGTAAAAGAGCTCGGAACACCGCTTGGTCACG
CATCGCCATGTCCGAAGTAACCCCACCTGAGCCGGGCGCCAGCGATTATGAGATTTACAA
GGAAGGATTTCACGATCGTCTGTCCAGGTACTGGCCAGAGCCGCGTGAGCAGCTGCACGC
GGGCGGCTGGCAGCGCACCAACCAGATGCTCGGAGACATCCGCCACCTCGCTGCAGTCCA
CGGCTGCGGCCAAATCAAGCAGGCCCTGGACCTGTGCTGCGGTGAGGGCGCTACGGCCGT
ATACGTTGCGGCCAAGGAAGGATGGGAGGTGACAGGCGTTGAGATCGTTCCAACAGCCAC
CAAGGTGGCGCGCGCGCGGGCCAGCGCGTACGGCAGCGTGGTGCGGGTACGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001757A_C01 KCC001757A_c01
         (534 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_625135.1| putative methyltransferase [Streptomyces coelic...    46  3e-04
ref|NP_335872.1| conserved hypothetical protein [Mycobacterium t...    45  5e-04
ref|NP_215893.1| hypothetical protein Rv1377c [Mycobacterium tub...    45  5e-04
ref|ZP_00019433.1| hypothetical protein [Chloroflexus aurantiacus]     45  8e-04
gb|AAG42853.1|AF323753_8 SnogM [Streptomyces nogalater]                43  0.002

>ref|NP_625135.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
           gi|7481051|pir||T36448 probable methyltransferase -
           Streptomyces coelicolor gi|5459239|emb|CAB48912.1|
           putative methyltransferase [Streptomyces coelicolor
           A3(2)]
          Length = 215

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 26/49 (53%), Positives = 32/49 (65%)
 Frame = +2

Query: 383 ALDLCCGEGATAVYVAAKEGWEVTGVEIVPTATKVARARASAYGSVVRV 529
           ALDL CGEGA AV++A++ GW VTGV+I  TA + A   A   G   RV
Sbjct: 45  ALDLGCGEGADAVWLASR-GWRVTGVDISATALERAAGHADGAGVGDRV 92

>ref|NP_335872.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
           gi|13881033|gb|AAK45686.1| conserved hypothetical
           protein [Mycobacterium tuberculosis CDC1551]
          Length = 226

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 29/77 (37%), Positives = 39/77 (49%)
 Frame = +2

Query: 296 HAGGWQRTNQMLGDIRHLAAVHGCGQIKQALDLCCGEGATAVYVAAKEGWEVTGVEIVPT 475
           H GGW               VHG       LD+ CG G  A+Y+A + G++VTG++I PT
Sbjct: 54  HTGGW---------------VHG-----DVLDIGCGLGDNAIYLA-RNGYQVTGLDISPT 92

Query: 476 ATKVARARASAYGSVVR 526
           A   A+ RAS  G  V+
Sbjct: 93  ALTTAKRRASDAGVDVK 109

>ref|NP_215893.1| hypothetical protein Rv1377c [Mycobacterium tuberculosis H37Rv]
           gi|31792571|ref|NP_855064.1| PUTATIVE TRANSFERASE
           [Mycobacterium bovis subsp. bovis AF2122/97]
           gi|7476750|pir||F70958 hypothetical protein Rv1377c -
           Mycobacterium tuberculosis  (strain H37RV)
           gi|1621259|emb|CAB02638.1| hypothetical protein Rv1377c
           [Mycobacterium tuberculosis H37Rv]
           gi|31618160|emb|CAD94273.1| PUTATIVE TRANSFERASE
           [Mycobacterium bovis subsp. bovis AF2122/97]
          Length = 212

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 29/77 (37%), Positives = 39/77 (49%)
 Frame = +2

Query: 296 HAGGWQRTNQMLGDIRHLAAVHGCGQIKQALDLCCGEGATAVYVAAKEGWEVTGVEIVPT 475
           H GGW               VHG       LD+ CG G  A+Y+A + G++VTG++I PT
Sbjct: 40  HTGGW---------------VHG-----DVLDIGCGLGDNAIYLA-RNGYQVTGLDISPT 78

Query: 476 ATKVARARASAYGSVVR 526
           A   A+ RAS  G  V+
Sbjct: 79  ALTTAKRRASDAGVDVK 95

>ref|ZP_00019433.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 199

 Score = 44.7 bits (104), Expect = 8e-04
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 380 QALDLCCGEGATAVYVAAKEGWEVTGVEIVPTATKVARARASAYGSVVRVR 532
           +A+DL CG G   V++A + GW+V GV+ VP A  +A+ R +A G   RVR
Sbjct: 39  RAIDLGCGTGRACVWLA-RAGWQVDGVDFVPEAIAMAQERVAAAGVGDRVR 88

>gb|AAG42853.1|AF323753_8 SnogM [Streptomyces nogalater]
          Length = 278

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 36/104 (34%), Positives = 46/104 (43%), Gaps = 10/104 (9%)
 Frame = +2

Query: 248 FHDRLSRYWPEPRE-QLHAGGWQ---------RTNQMLGDIRHLAAVHGCGQIKQALDLC 397
           F+D  SR   E     LH G W          R +Q L ++       G GQ  + LD+ 
Sbjct: 14  FYDGSSRLIAELNGGSLHFGCWDSLPADAGMDRASQRLTEMMTERIEVGPGQ--RVLDIG 71

Query: 398 CGEGATAVYVAAKEGWEVTGVEIVPTATKVARARASAYGSVVRV 529
           CG GA AV +A   G EV G+ I P   ++A A A   G   RV
Sbjct: 72  CGTGAPAVQLARATGAEVVGITISPEQVRLATAHAEREGVAERV 115



EST assemble image


clone accession position
1 CM093a02_r AV392946 1 529
2 HC026d06_r AV633876 23 534
3 MX056f09_r BP088296 23 351




Chlamydomonas reinhardtii
Kazusa DNA Research Institute