KCC001753A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001753A_C01 KCC001753A_c01
gcaccagaacaCTCACTTGACGTAAACTCCAACACAACTCTGAGCACGCAAAGACACACG
TTTCGACGTCACAGGCACTCGCGACACAACACCACTGTGCAACTCGCTGTTTTCCTTCCC
GCACCCGGCACCTTCATCAAACTACAGCCATGCCGCCCGTCAAGGCCCCTGTTGCCGATG
CCCCGGCCAGCCCGGGCGCTGAGTGCTCTTTCCAAAGCATCGTACGCGCTGTTCCTTGAA
GCTGCCGCGGGAACCGGGGGAAAGGGATGCTTTCTTAGCCCCATGAGCATCATTTACGCA
CTCACGCTGGCCCTCAACGGCGCGGGCCCCAAGACGTCCACGCACTCGGAGCTGCTGGCA
GCCATTGCCGGCGGCGCCGAGAACGCCGCCAACTTGGGTGAGGGCGACCTGAACTCGGAG
CTGGGCCGCACCATGACGCTGCTGAACGGAGCCGGCGCCGGCGCGGCCGAGGGCTCCGCC
TCCCGCATGGTGCTCGCCAACAGCGTGTGGACGCACCGCGGCACCACGCTGCGTAAGGAG
TACGTGGACGCCATGCAGTCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001753A_C01 KCC001753A_c01
         (563 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_924916.1| probable serine protease inhibitor [Gloeobacter...    57  1e-07
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    45  7e-04
ref|NP_484821.1| similar to serine protease inhibitor [Nostoc sp...    40  0.017
ref|ZP_00008666.1| COG0454: Histone acetyltransferase HPA2 and r...    40  0.022
ref|NP_901490.1| probable ribonuclease E [Chromobacterium violac...    40  0.022

>ref|NP_924916.1| probable serine protease inhibitor [Gloeobacter violaceus]
           gi|35212537|dbj|BAC89911.1| glr1970 [Gloeobacter
           violaceus]
          Length = 411

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
 Frame = +1

Query: 196 ALSALSKASYALFLEAAAGTGGKGC----FLSPMSIIYALTLALNGAGPKTSTHSELLAA 363
           A+  LS A     L+  A    K       +SP+SI  ALT+A NGAG  T T      A
Sbjct: 39  AVKMLSDAQTRFGLQLFAALHNKAADQNVVISPLSIALALTMAYNGAGGSTRTAMAQTLA 98

Query: 364 IAGGAENAANLGEGDLNSELGRTMTLLNGAGAGAAEGSASRMVLANSVWTHRGTTLRKEY 543
           + G  E+A N G  DL + L +T                SR+++ANS+W+ +G TL+  +
Sbjct: 99  LDGLDEDAINQGSADLATALQKT-------------PKTSRVLIANSLWSQKGITLQPAF 145

Query: 544 V 546
           +
Sbjct: 146 I 146

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 47/147 (31%), Positives = 59/147 (39%), Gaps = 3/147 (2%)
 Frame = +2

Query: 131 PSSNYSHAARQGPCCRCP--GQPGR*VLFPKHRTRCSLKLPREPGERDAFLAP*ASFTHS 304
           PSS  +   R  P C  P    P R    P  R RC+   P  P        P  S T S
Sbjct: 87  PSSCCARRPRSPPFCFPPPAAAPARRAHRPP-RCRCAPAAPSPPARA---FGPWRSSTRS 142

Query: 305 RWPSTARAPRRPRTRSCWQPLPAAPRTPPTWVRAT*TRSWAAP*RC*TEPAPARPRAPPP 484
               +AR+P+ P     W+     PR P T   +   R+ A+  RC   P+  R  AP P
Sbjct: 143 ----SARSPQSPTAG--WRSFAPTPRRPCTAADSGTRRTAASGTRCRGTPSGTRCSAPAP 196

Query: 485 AWCSP-TACGRTAAPRCVRSTWTPCSR 562
              SP +A     +PR  RS   P SR
Sbjct: 197 CAASPASARSPPVSPRTARSASRPSSR 223

 Score = 32.3 bits (72), Expect = 4.6
 Identities = 36/126 (28%), Positives = 40/126 (31%)
 Frame = +2

Query: 119 PHPAPSSNYSHAARQGPCCRCPGQPGR*VLFPKHRTRCSLKLPREPGERDAFLAP*ASFT 298
           P  A  S     A  G   RC G P          TRCS   P       A   P +   
Sbjct: 164 PCTAADSGTRRTAASGT--RCRGTPSG--------TRCSAPAPCAASPASARSPPVS--- 210

Query: 299 HSRWPSTARAPRRPRTRSCWQPLPAAPRTPPTWVRAT*TRSWAAP*RC*TEPAPARPRAP 478
               P TAR+  RP +RS   P  A+PRT                  C   P P      
Sbjct: 211 ----PRTARSASRPSSRSASAPSRASPRT------------------CSCRPPPRSSTVS 248

Query: 479 PPAWCS 496
            PA CS
Sbjct: 249 RPASCS 254

>ref|NP_484821.1| similar to serine protease inhibitor [Nostoc sp. PCC 7120]
           gi|25534306|pir||AH1903 hypothetical protein all0778
           [imported] - Nostoc sp. (strain PCC 7120)
           gi|17130123|dbj|BAB72735.1| ORF_ID:all0778~similar to
           serine protease inhibitor [Nostoc sp. PCC 7120]
          Length = 374

 Score = 40.4 bits (93), Expect = 0.017
 Identities = 32/119 (26%), Positives = 50/119 (41%), Gaps = 1/119 (0%)
 Frame = +1

Query: 193 RALSALSKASYALFLEAAAGTGG-KGCFLSPMSIIYALTLALNGAGPKTSTHSELLAAIA 369
           + + A +K  + LF E A   G  K   +SP S+  AL +  NGA   T         + 
Sbjct: 5   KIVDANNKFGFKLFSEIAKQDGNAKNISVSPTSVAIALAMTYNGASGSTQKAMAKTLELQ 64

Query: 370 GGAENAANLGEGDLNSELGRTMTLLNGAGAGAAEGSASRMVLANSVWTHRGTTLRKEYV 546
           G +    N G   LN        LL   G         ++ +ANS+W ++  +LR ++V
Sbjct: 65  GISLPELNSGYASLNK-------LLQNPGENV------QLTIANSLWVNQDVSLRPDFV 110

>ref|ZP_00008666.1| COG0454: Histone acetyltransferase HPA2 and related
           acetyltransferases [Rhodopseudomonas palustris]
          Length = 320

 Score = 40.0 bits (92), Expect = 0.022
 Identities = 24/65 (36%), Positives = 34/65 (51%), Gaps = 2/65 (3%)
 Frame = -2

Query: 562 ATAWRPRTPYAAWCRGASTRCWRAPCGRRSPRPRRRRLRSAA-SWCGPA-PSSGRPHPSW 389
           A +W    P   WCRG+    W A    R P+    R  +A+ +W  PA P++ RP P W
Sbjct: 4   ARSWSASRPI--WCRGSPRSIWSA----RPPKCSAARAAAASPTWRRPAVPTAPRPAPRW 57

Query: 388 RRSRR 374
           +RSR+
Sbjct: 58  KRSRQ 62

>ref|NP_901490.1| probable ribonuclease E [Chromobacterium violaceum ATCC 12472]
           gi|34103131|gb|AAQ59494.1| probable ribonuclease E
           [Chromobacterium violaceum ATCC 12472]
          Length = 981

 Score = 40.0 bits (92), Expect = 0.022
 Identities = 42/133 (31%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
 Frame = +3

Query: 156 PVKAPVADAPASPGAECSFQSIVRAVP*SCRGNRGKGMLS*PHEHHL----RTHAGPQRR 323
           P KAPV DA   P            V  S RGN  +G    PHE       R     +R 
Sbjct: 568 PEKAPVQDAKKKP------------VQSSSRGNEQRGNRQRPHERRTGGQARREHEQRRN 615

Query: 324 GPQDVHALGAAGSHCRRRRERRQLG*GRPELGAGPHHDAAERSR-------RRRGRGLRL 482
           G QD    G +     R+   R     RPE    P  D  ER+        RRR R  R 
Sbjct: 616 GQQDE---GKSRRPDERKDAERAERADRPERKEAPSRDREERNEQPRERGSRRREREGRE 672

Query: 483 PHGARQQRVDAPR 521
           P   ++ R  APR
Sbjct: 673 PREPKEVREQAPR 685



EST assemble image


clone accession position
1 CM092a12_r AV392697 1 533
2 LC038h08_r AV621641 12 576
3 LC026g11_r AV620785 15 281
4 MX025g02_r BP087115 16 222
5 HC060b02_r AV636484 23 472
6 HC060e02_r AV636511 36 464
7 MX230d08_r BP090874 91 517




Chlamydomonas reinhardtii
Kazusa DNA Research Institute