KCC001747A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001747A_C01 KCC001747A_c01
caacaagtcccgcatgtcgcagctactcgtgaaccagcagaagcagcagcccgcagcggc
agcagcaggcgcggcggctgGGGCGGCGGCAGCGGCAACGCAGTGAGCAGTGTGTGGACG
GCGGCGCGAGGGACGGTTGGTGGGCTGCGGCGGCGCTCACGCATGTCTGCGAGCTACCGC
TTGGACTGCAGGCAAGTTGTCGGCGGCATGGCTTACTTCGGGGGTGGGGGGCAACCGGGA
CGCCGGGCGAGATGCTGGGCGGAAGGCTTCTTGTGGGTGGAGGTACGGTCAACAGTGACA
AGCGCTTGGCCCGTGTGGGCGCATAAGCGCCGAGGAGGGCAGCACTGCGGATCGGGCGTG
GTGGACTGGCGGGTATGAGGCGGCGGCGGGCCACCGTCGGTGAGGCTGTGGTCGTGAGTG
GCTCGTGGCTTGAGGCTGTTAGCTGTTGCGCGTCCCAAATGCTTATCGACAAAGCGTCCC
GGGCTGTTCTGCTAGTACCGTAATTGGTGTTTTTTTGTTTGGGACAGCGTGACAACTCTT
ACACGGTGCAATAAGGCCCAACAAGGCCACTTGCCGGCGCATGCGCATATGCATGCGTGT
GCGCGCAAGGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001747A_C01 KCC001747A_c01
         (613 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO32622.1| CR066 protein [Chlamydomonas reinhardtii]              267  8e-71
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    48  1e-04
gb|AAK82442.1|AC091247_9 hypothetical protein [Oryza sativa]           45  6e-04
ref|NP_775078.1| zonadhesin isoform 1 [Homo sapiens] gi|12667410...    45  8e-04
gb|AAL04410.1| zonadhesin splice variant 1 [Homo sapiens]              45  8e-04

>gb|AAO32622.1| CR066 protein [Chlamydomonas reinhardtii]
          Length = 366

 Score =  267 bits (683), Expect = 8e-71
 Identities = 125/125 (100%), Positives = 125/125 (100%)
 Frame = +1

Query: 1   QQVPHVAATREPAEAAARSGSSRRGGWGGGSGNAVSSVWTAARGTVGGLRRRSRMSASYR 180
           QQVPHVAATREPAEAAARSGSSRRGGWGGGSGNAVSSVWTAARGTVGGLRRRSRMSASYR
Sbjct: 242 QQVPHVAATREPAEAAARSGSSRRGGWGGGSGNAVSSVWTAARGTVGGLRRRSRMSASYR 301

Query: 181 LDCRQVVGGMAYFGGGGQPGRRARCWAEGFLWVEVRSTVTSAWPVWAHKRRGGQHCGSGV 360
           LDCRQVVGGMAYFGGGGQPGRRARCWAEGFLWVEVRSTVTSAWPVWAHKRRGGQHCGSGV
Sbjct: 302 LDCRQVVGGMAYFGGGGQPGRRARCWAEGFLWVEVRSTVTSAWPVWAHKRRGGQHCGSGV 361

Query: 361 VDWRV 375
           VDWRV
Sbjct: 362 VDWRV 366

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 39/128 (30%), Positives = 43/128 (33%)
 Frame = -2

Query: 438 QPQATSHSRPQPHRRWPAAASYPPVHHARSAVLPSSALMRPHGPSACHC*PYLHPQEAFR 259
           QP     + PQ H   P   + P    A +   P  A    H P      P   P     
Sbjct: 120 QPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAP------PPPPP----- 168

Query: 258 PASRPASRLPPTPEVSHAADNLPAVQAVARRHA*APPQPTNRPSRRRPHTAHCVAAAAAP 79
           PA+RP    PP P    AA   PA  A     A  P  PT RP    P          AP
Sbjct: 169 PAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAP 228

Query: 78  AAAPAAAA 55
            A PA  A
Sbjct: 229 TATPAPTA 236

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 47/131 (35%), Positives = 57/131 (42%), Gaps = 7/131 (5%)
 Frame = -2

Query: 438 QPQATS-HSRP-QPHRRWPAAASYPPVHHARSAVLPSSALMRPHGPSA-----CHC*PYL 280
           QPQ T    +P QP +  P AA  PP   AR A  P +A   PH P+A         P  
Sbjct: 38  QPQETGPDGKPKQPPKGPPGAA--PPAAPARPAAPPPAAAP-PHPPAAPPPAAAPPRPAA 94

Query: 279 HPQEAFRPASRPASRLPPTPEVSHAADNLPAVQAVARRHA*APPQPTNRPSRRRPHTAHC 100
            P     PA+RPA   PP P  +    + P   A  ++HA  PP P   P+ R   T   
Sbjct: 95  PPPPPPPPAARPAPPPPPPPPAAPKQPSPPPA-AAPQQHAPTPPPPA-PPAARPAPTPPA 152

Query: 99  VAAAAAPAAAP 67
              AAAP  AP
Sbjct: 153 PPPAAAPQHAP 163

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 38/129 (29%), Positives = 43/129 (32%), Gaps = 4/129 (3%)
 Frame = -3

Query: 389 PPPPHTRQSTTPDPQCCPPRRLCAHTGQALVTVDRTSTHKKPSAQHLARRPGCPPPPK*A 210
           PPP       TP PQ   P       G             +P+A   A  P   P    A
Sbjct: 323 PPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAAAPSTVPGSAAA 382

Query: 209 MPPTTCLQSKR*LADMRERRRSPPTVPRAAVHTLLTALPLPPP--QPPRLLLPLRAAAS- 39
            PP    Q             +PPTV  A         PLPPP   P R L PL   A  
Sbjct: 383 TPPPNRAQF------------APPTVTPAFQAAPTVVAPLPPPPRPPQRDLTPLAIGAGV 430

Query: 38  -AGSRVAAT 15
            AG+ + AT
Sbjct: 431 VAGAVIGAT 439

 Score = 32.3 bits (72), Expect = 5.5
 Identities = 29/99 (29%), Positives = 38/99 (38%)
 Frame = -1

Query: 409 TASPTVARRRLIPASPPRPIRSAALLGAYAPTRAKRLSLLTVPPPTRSLPPSISPGVPVA 230
           TA+PT       PA+P     S A     APT     +    P PT +  P  +PG P A
Sbjct: 194 TATPTPVAPP--PAAPTARPGSPAPAATPAPTPTPAPT--ATPAPTATPAPGSTPGAPPA 249

Query: 229 PHPRSKPCRRQLACSPSGSSQTCVSAAAAHQPSLAPPST 113
             P + P   +    P+  S     A  A   + AP  T
Sbjct: 250 GRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGT 288

 Score = 32.0 bits (71), Expect = 7.2
 Identities = 37/136 (27%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
 Frame = -1

Query: 496 TSRTARDALSISIWDAQ-QLTASSHEPLTTTASPTVARRRLIPASPPRPIRSAALLGAYA 320
           T+  A+ A  + +  AQ Q T    +P      P  A      A P  P R AA   A A
Sbjct: 22  TASHAQGASPLVVAQAQPQETGPDGKPKQPPKGPPGA------APPAAPARPAAPPPAAA 75

Query: 319 PTRAKRLSLLTVPPPTRSLPPSISPGVPVAPHPRSKPCRRQLA--------CSPSGSSQT 164
           P           P P  + PP+ +P  P AP P   P   + A         +P   S  
Sbjct: 76  P-----------PHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPP 124

Query: 163 CVSAAAAHQPSLAPPS 116
             +A   H P+  PP+
Sbjct: 125 PAAAPQQHAPTPPPPA 140

>gb|AAK82442.1|AC091247_9 hypothetical protein [Oryza sativa]
          Length = 323

 Score = 45.4 bits (106), Expect = 6e-04
 Identities = 52/153 (33%), Positives = 60/153 (38%), Gaps = 17/153 (11%)
 Frame = -2

Query: 456 GTRNS*QPQATSHSRPQPHRRWPAAASYPPVHHARSAVLPSSALMR---------PHGPS 304
           G R +  P ATS S P   RR    A  PP H A +   PSS   R         P  P 
Sbjct: 25  GKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAG--PSSTNARRSSRLAGAPPATPG 82

Query: 303 ACHC*PYLHPQEAFRPASRPASRLPPTPEVSHAA---DNLPAVQAVARRHA*APPQP--- 142
           A    P      A R ++R A   PP P  + AA    + P     + R A AP  P   
Sbjct: 83  AAAAAPTSSSPTAARRSNRLAG-APPDPPAAVAAPPTSSSPTTAMRSNRLAGAPSDPPAA 141

Query: 141 -TNRPSRRRPHTA-HCVAAAAAPAAAPAAAAAG 49
            T  P+   P TA      A AP   PAAA AG
Sbjct: 142 ATAGPTSPSPTTARRSNRLAGAPPDPPAAATAG 174

>ref|NP_775078.1| zonadhesin isoform 1 [Homo sapiens]
            gi|12667410|gb|AAK01431.1|AF332975_1 zonadhesin variant 1
            [Homo sapiens]
          Length = 2724

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 42/160 (26%), Positives = 64/160 (39%), Gaps = 27/160 (16%)
 Frame = -1

Query: 448  QQLTASSHEPLTTTASPTVARRRLIPASPPRPIRSAALLGA-----YAPTRAKRLSLLTV 284
            ++LT  + +P   T  PT+   +L    PP P  +A  L A     +AP+      +L  
Sbjct: 974  EKLTIPTEKPTIPTEKPTIPTEKLTALRPPHPSPTATGLAALVMSPHAPSTPMTSVILGT 1033

Query: 283  PPPTRS----LPPS------ISPGVPVAPHPRSKP-CRRQLACSPS--GSSQTCVSAAAA 143
               +RS     PP+        P    +P P   P CR    C+P    S   C+ A++ 
Sbjct: 1034 TTTSRSSTERCPPNARYESCACPASCKSPRPSCGPLCREGCVCNPGFLFSDNHCIQASSC 1093

Query: 142  --------HQPSLAPPSTHCSLRCRCRRPSRRAC-CCRCG 50
                    ++P     S +C+  CRC   SR  C   +CG
Sbjct: 1094 NCFYNNDYYEPGAEWFSPNCTEHCRCWPGSRVECQISQCG 1133

>gb|AAL04410.1| zonadhesin splice variant 1 [Homo sapiens]
          Length = 2724

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 42/160 (26%), Positives = 64/160 (39%), Gaps = 27/160 (16%)
 Frame = -1

Query: 448  QQLTASSHEPLTTTASPTVARRRLIPASPPRPIRSAALLGA-----YAPTRAKRLSLLTV 284
            ++LT  + +P   T  PT+   +L    PP P  +A  L A     +AP+      +L  
Sbjct: 974  EKLTIPTEKPTIPTEKPTIPTEKLTALRPPHPSPTATGLAALVMSPHAPSTPMTSVILGT 1033

Query: 283  PPPTRS----LPPS------ISPGVPVAPHPRSKP-CRRQLACSPS--GSSQTCVSAAAA 143
               +RS     PP+        P    +P P   P CR    C+P    S   C+ A++ 
Sbjct: 1034 TTTSRSSTERCPPNARYESCACPASCKSPRPSCGPLCREGCVCNPGFLFSDNHCIQASSC 1093

Query: 142  --------HQPSLAPPSTHCSLRCRCRRPSRRAC-CCRCG 50
                    ++P     S +C+  CRC   SR  C   +CG
Sbjct: 1094 NCFYNNDYYEPGAEWFSPNCTEHCRCWPGSRVECQISQCG 1133



EST assemble image


clone accession position
1 LC035g03_r AV621412 1 497
2 CM090b12_r AV392325 308 613




Chlamydomonas reinhardtii
Kazusa DNA Research Institute