KCC001746A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001746A_C01 KCC001746A_c01
ctcgagttttttttttttttttttggaCAAGTCTTCCTTTTACACATCTCCCTTCCTCAA
CCCCAACCGCCGCCACTCCACTCGGCTGGCCTTGGCCGAGCTCTCGTGCACTGCACGCAA
ACCACTGCGTTTCTTGGGCACAGCCTCACACAAAGCACACACCATATCCAGTGGAACACT
AACACTGGCCCCAGGCCCGTGTTCGCGGATGTCTCCTGGCCAAGTAACTGACACGCTGGA
ATGGCACTGGCGCAGTCGCCTGGCTGCTTGGCGCAAAGCGCCTTCTGACAAAATCGCCTG
GCGTCCCCGACAGCCACCAGCACAGCGTCACGCCAACTGCGTGCCGACCGTATCGTCAGT
GCACTAGCTCCGTACTACCCCAGGGGTTTCTTCCTCAGTTCCTGCAGCCATCAGGGCCGA
GAACGCTCCGCGCACCCGGCAAAACGCGCACACGACCTCTCAGCAGAGAGAGGCACATCG
GCGCAGAGTGCATGATCTTGAGCTTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001746A_C01 KCC001746A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_352290.1| similar to MEGF6 [Homo sapiens]                       36  0.31
pir||S45116 natriuretic peptide clearance receptor homolog - rat...    34  1.2
ref|NP_504145.1| metridin-like ShK toxin family member (5E584) [...    33  1.6
ref|XP_214666.2| similar to mKIAA1930 protein [Rattus norvegicus]      33  1.6
emb|CAC28826.2| conserved hypothetical protein [Neurospora crassa]     33  2.0

>ref|XP_352290.1| similar to MEGF6 [Homo sapiens]
          Length = 1144

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 243 GTGAVAWLLGAKRLLTKSPGVPDSHQHSVTPTACRPYRQCTSSVLPQGFLPQFLQPSGPR 422
           G G  AW +G +R  T++P +  S +H  +PT          ++LPQG  P  +   GPR
Sbjct: 158 GCGWQAWCVGHERRATRNPCLKPSSEHEASPT-------LRVAILPQG--PGLVMGEGPR 208

Query: 423 -TLRAPGKTRTRPLS 464
            T   PG     P S
Sbjct: 209 STSEDPGLFSPGPRS 223

>pir||S45116 natriuretic peptide clearance receptor homolog - rat
           gi|496658|emb|CAA55330.1| homologue to natriuretic
           peptide clearance receptor [Rattus norvegicus]
          Length = 475

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = +2

Query: 137 GTASHKAHTISS------GTLTLAPGPCSRMSPGQVTD 232
           GT     HT S+      GTL L PGPCSR   GQV D
Sbjct: 40  GTVRPDGHTRSANEPSCTGTLFLVPGPCSRDQKGQVRD 77

>ref|NP_504145.1| metridin-like ShK toxin family member (5E584) [Caenorhabditis
           elegans] gi|7507160|pir||T31834 hypothetical protein
           T05B4.8 - Caenorhabditis elegans
           gi|2315411|gb|AAC69058.1| Hypothetical protein T05B4.8
           [Caenorhabditis elegans]
          Length = 312

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -1

Query: 491 ALCADVPLSAERSCARFAGCAERSRP*WLQELRKKPLG*YGASALTIRSARS--WRDAVL 318
           A+  D+  +A  +C +  G   ++   +   +    L     +++T+    S  WR  + 
Sbjct: 150 AVVQDMKTAAAANCPKTCGLCCQTDAYYCPNVAYPRLN---CASITLSQCNSPAWRTIIA 206

Query: 317 VAVGDARRFCQKALCAKQPGDCASAIPACQLLGQETSANT 198
                A  FC +A C     +C + +  CQ +G +T  NT
Sbjct: 207 ADCPSACGFCNQAGCVDAVTNCGTDLSICQNIGMQTFVNT 246

>ref|XP_214666.2| similar to mKIAA1930 protein [Rattus norvegicus]
          Length = 1346

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 29/94 (30%), Positives = 41/94 (42%)
 Frame = +1

Query: 49  SLPQPQPPPLHSAGLGRALVHCTQTTAFLGHSLTQSTHHIQWNTNTGPRPVFADVSWPSN 228
           S  +P P PL S G   ++    QTT    H+    TH     T++ P P    VS PSN
Sbjct: 700 STHKPMPSPLTSTGSIPSVTDSIQTTTSPTHTTPSPTHTTVSPTHSTPSPTHTTVS-PSN 758

Query: 229 *HAGMALAQSPGCLAQSAF*QNRLASPTATSTAS 330
             A ++ + +   L+ S        SPT  +T S
Sbjct: 759 --AALSPSNATPSLSHST------TSPTQKATMS 784

>emb|CAC28826.2| conserved hypothetical protein [Neurospora crassa]
          Length = 1091

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 34/126 (26%), Positives = 45/126 (34%), Gaps = 10/126 (7%)
 Frame = +2

Query: 125 LRFLGTASHKAHTISSGTLTLAPG--PCS-RMSPGQVT-DTLEWHWRSRLAAWRKAPSDK 292
           + +LGT       + SG     PG  PC  R  PG  T   L W  +   A W     D+
Sbjct: 56  IAWLGTGKTGWVEVGSGPCFTKPGTEPCRPRRVPGSSTFQNLRWDSKQDAACWAPTTDDR 115

Query: 293 IAWRPRQPPAQR-----HANCVPTVSSVH*LRTTPGVSSS-VPAAIRAENAPRTRQNAHT 454
            A + + PP  R       +   +    H L      SSS  P ++R    P  R     
Sbjct: 116 TASKLQYPPPPRWTISLSCDSRHSTDPSHWLPDGHSTSSSPFPKSVRCSPRPEPRSTKLK 175

Query: 455 TSQQRE 472
           TS   E
Sbjct: 176 TSTMSE 181



EST assemble image


clone accession position
1 CM090a02_r AV392317 1 391
2 LC044g12_r AV622015 28 525




Chlamydomonas reinhardtii
Kazusa DNA Research Institute